RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 VAMP4O75379 141 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 HSP90AB1P08238 724 aaKnown RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 TEFQ10587 303 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 TAF7Q15545 349 aaPredicted RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 TWISTNBQ3B726 338 aaPredicted RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 ALDH1L2Q3SY69 923 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 UNC5CLQ8IV45 518 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 FNBP4Q8N3X1 1017 aaPredicted RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 C8orf58Q8NAV2 365 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 DCAF5Q96JK2 942 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 BCL2L13Q9BXK5 485 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 SMC4Q9NTJ3 1288 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 MIS18AQ9NYP9 233 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 THRAP3Q9Y2W1 955 aaKnown RBP8.57□□□□□ -1.04
VPS41-204ENST00000413141 KRT24Q2M2I5 525 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 ERICH6BQ5W0A0 696 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 POTEHQ6S545 545 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 SSH1Q8WYL5 1049 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 CDCA7Q9BWT1 371 aaPredicted RBP8.56□□□□□ -1.04
VPS41-204ENST00000413141 SLC52A2Q9HAB3 445 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 DOT1LQ8TEK3 1739 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 C5P01031 1676 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 UBR2Q8IWV8 1755 aa8.56□□□□□ -1.04
VPS41-204ENST00000413141 SOS1Q07889 1333 aaPredicted RBP8.55□□□□□ -1.04
VPS41-204ENST00000413141 KIF16BQ96L93 1317 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 BTBD11A6QL63 1104 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 ELL2O00472 640 aaPredicted RBP8.55□□□□□ -1.04
VPS41-204ENST00000413141 CANXP27824 592 aaKnown RBP8.55□□□□□ -1.04
VPS41-204ENST00000413141 NKX1-1Q15270 411 aaPredicted RBP8.55□□□□□ -1.04
VPS41-204ENST00000413141 VPS72Q15906 364 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 C20orf194Q5TEA3 1177 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 MEX3CQ5U5Q3 659 aaKnown RBP8.55□□□□□ -1.04
VPS41-204ENST00000413141 BARGINQ6ZT62 677 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 NGLY1Q96IV0 654 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 LAMB4A4D0S4 1761 aa8.55□□□□□ -1.04
VPS41-204ENST00000413141 ATRNO75882 1429 aa8.54□□□□□ -1.04
VPS41-204ENST00000413141 HEG1Q9ULI3 1381 aa8.54□□□□□ -1.04
VPS41-204ENST00000413141 BRPF1P55201 1214 aaPredicted RBP8.54□□□□□ -1.04
VPS41-204ENST00000413141 DDX54Q8TDD1 881 aaKnown RBP8.54□□□□□ -1.04
VPS41-204ENST00000413141 FRAT1Q92837 279 aaPredicted RBP8.54□□□□□ -1.04
VPS41-204ENST00000413141 USP21Q9UK80 565 aa8.54□□□□□ -1.04
VPS41-204ENST00000413141 KCPQ6ZWJ8 1503 aa8.54□□□□□ -1.04
VPS41-204ENST00000413141 AFF2P51816 1311 aa8.54□□□□□ -1.04
VPS41-204ENST00000413141 KCNQ3O43525 872 aa8.53□□□□□ -1.04
VPS41-204ENST00000413141 HOXB7P09629 217 aa8.53□□□□□ -1.04
VPS41-204ENST00000413141 EIF4A1P60842 406 aaKnown RBP8.53□□□□□ -1.04
VPS41-204ENST00000413141 PDE3AQ14432 1141 aa8.53□□□□□ -1.04
VPS41-204ENST00000413141 ZKSCAN2Q63HK3 967 aa8.53□□□□□ -1.04
VPS41-204ENST00000413141 MRPL50Q8N5N7 158 aaKnown RBP8.53□□□□□ -1.04
VPS41-204ENST00000413141 CRBNQ96SW2 442 aa8.53□□□□□ -1.04
VPS41-204ENST00000413141 CCDC9Q9Y3X0 531 aaKnown RBP8.53□□□□□ -1.04
VPS41-204ENST00000413141 ITGB4P16144 1822 aa8.52□□□□□ -1.04
VPS41-204ENST00000413141 ERVV-2B6SEH9 535 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 EXOC5O00471 708 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 TRIM27P14373 513 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 CABP4P57796 275 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 DDB1Q16531 1140 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 ZNF790Q6PG37 636 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 NFATC2IPQ8NCF5 419 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 EXOC6Q8TAG9 804 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 NOB1Q9ULX3 412 aaKnown RBP8.52□□□□□ -1.05
VPS41-204ENST00000413141 TNNQ9UQP3 1299 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 RGS12O14924 1447 aa8.52□□□□□ -1.05
VPS41-204ENST00000413141 N4BP2Q86UW6 1770 aaPredicted RBP8.51□□□□□ -1.05
VPS41-204ENST00000413141 TCERG1O14776 1098 aaKnown RBP8.51□□□□□ -1.05
VPS41-204ENST00000413141 SLC39A6Q13433 755 aa8.51□□□□□ -1.05
VPS41-204ENST00000413141 ATF7IPQ6VMQ6 1270 aa8.51□□□□□ -1.05
VPS41-204ENST00000413141 PANK1Q8TE04 598 aa8.51□□□□□ -1.05
VPS41-204ENST00000413141 PPP4R2Q9NY27 417 aa8.51□□□□□ -1.05
VPS41-204ENST00000413141 BCL9O00512 1426 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 IPO8O15397 1037 aaKnown RBP8.5□□□□□ -1.05
VPS41-204ENST00000413141 RLBP1P12271 317 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 FAM98CQ17RN3 349 aaKnown RBP8.5□□□□□ -1.05
VPS41-204ENST00000413141 HDGFL1Q5TGJ6 251 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 CCDC30Q5VVM6 783 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 FTSJ3Q8IY81 847 aaKnown RBP8.5□□□□□ -1.05
VPS41-204ENST00000413141 DZIP1LQ8IYY4 767 aaKnown RBP8.5□□□□□ -1.05
VPS41-204ENST00000413141 TTC5Q8N0Z6 440 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 ARHGAP45Q92619 1136 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 ABCC4O15439 1325 aa8.5□□□□□ -1.05
VPS41-204ENST00000413141 GIGYF1O75420 1035 aaPredicted RBP8.49□□□□□ -1.05
VPS41-204ENST00000413141 MS4A1P11836 297 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 MARCH10Q8NA82 808 aaPredicted RBP8.49□□□□□ -1.05
VPS41-204ENST00000413141 CLUAP1Q96AJ1 413 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 STK31Q9BXU1 1019 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 TMOD3Q9NYL9 352 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 TRPC5Q9UL62 973 aaPredicted RBP8.49□□□□□ -1.05
VPS41-204ENST00000413141 CICQ96RK0 1608 aaPredicted RBP8.49□□□□□ -1.05
VPS41-204ENST00000413141 CACNA1FO60840 1977 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 PXDNLA1KZ92 1463 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 NHSQ6T4R5 1651 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 PTPRCP08575 1304 aa8.49□□□□□ -1.05
VPS41-204ENST00000413141 PRAMEF22A3QJZ6 481 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 SLC4A2P04920 1241 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 MVPQ14764 893 aaKnown RBP8.48□□□□□ -1.05
VPS41-204ENST00000413141 NECTIN2Q92692 538 aa8.48□□□□□ -1.05
VPS41-204ENST00000413141 ZNF496Q96IT1 587 aaPredicted RBP8.48□□□□□ -1.05
VPS41-204ENST00000413141 GJD4Q96KN9 370 aaPredicted RBP8.48□□□□□ -1.05
VPS41-204ENST00000413141 FMNL2Q96PY5 1086 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms