RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 IPO8O15397 1037 aaKnown RBP17.99■□□□□ 0.47
GPNMB-203ENST00000409458 NUTM2AQ8IVF1 878 aaPredicted RBP17.99■□□□□ 0.47
GPNMB-203ENST00000409458 PCDH11XQ9BZA7 1347 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 PCDH11YQ9BZA8 1340 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 NWD2Q9ULI1 1742 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 BTBD11A6QL63 1104 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 KCNQ3O43525 872 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 MS4A1P11836 297 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 USP35Q9P2H5 1018 aa17.98■□□□□ 0.47
GPNMB-203ENST00000409458 DISP2A7MBM2 1401 aa17.97■□□□□ 0.47
GPNMB-203ENST00000409458 MVPQ14764 893 aaKnown RBP17.97■□□□□ 0.47
GPNMB-203ENST00000409458 ZCRB1Q8TBF4 217 aaKnown RBP17.97■□□□□ 0.47
GPNMB-203ENST00000409458 JCADQ9P266 1359 aa17.97■□□□□ 0.47
GPNMB-203ENST00000409458 EIF4A1P60842 406 aaKnown RBP17.96■□□□□ 0.47
GPNMB-203ENST00000409458 ARHGAP45Q92619 1136 aa17.96■□□□□ 0.47
GPNMB-203ENST00000409458 DCAF5Q96JK2 942 aa17.96■□□□□ 0.47
GPNMB-203ENST00000409458 SLC52A2Q9HAB3 445 aa17.96■□□□□ 0.47
GPNMB-203ENST00000409458 SOS1Q07889 1333 aaPredicted RBP17.95■□□□□ 0.46
GPNMB-203ENST00000409458 HSP90AB1P08238 724 aaKnown RBP17.95■□□□□ 0.46
GPNMB-203ENST00000409458 TMEM57Q8N5G2 664 aa17.95■□□□□ 0.46
GPNMB-203ENST00000409458 SLIT2O94813 1529 aa17.95■□□□□ 0.46
GPNMB-203ENST00000409458 RGS12O14924 1447 aa17.95■□□□□ 0.46
GPNMB-203ENST00000409458 PELP1Q8IZL8 1130 aaKnown RBP17.94■□□□□ 0.46
GPNMB-203ENST00000409458 ABCC4O15439 1325 aa17.94■□□□□ 0.46
GPNMB-203ENST00000409458 TOGARAM1Q9Y4F4 1720 aa17.94■□□□□ 0.46
GPNMB-203ENST00000409458 ITPRIPQ8IWB1 547 aa17.93■□□□□ 0.46
GPNMB-203ENST00000409458 API5Q9BZZ5 524 aaKnown RBP17.92■□□□□ 0.46
GPNMB-203ENST00000409458 CACNA1FO60840 1977 aa17.92■□□□□ 0.46
GPNMB-203ENST00000409458 C5P01031 1676 aa17.92■□□□□ 0.46
GPNMB-203ENST00000409458 HEG1Q9ULI3 1381 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 LRP6O75581 1613 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 SLC4A2P04920 1241 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 CCDC30Q5VVM6 783 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 NFATC2IPQ8NCF5 419 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 NECTIN2Q92692 538 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 KDM2BQ8NHM5 1336 aa17.91■□□□□ 0.46
GPNMB-203ENST00000409458 HOXB7P09629 217 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 NKX1-1Q15270 411 aaPredicted RBP17.9■□□□□ 0.46
GPNMB-203ENST00000409458 HDGFL1Q5TGJ6 251 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 DDX54Q8TDD1 881 aaKnown RBP17.9■□□□□ 0.46
GPNMB-203ENST00000409458 DDX19BQ9UMR2 479 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 PAPPAQ13219 1627 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 SLC39A6Q13433 755 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 G2E3Q7L622 706 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 STK31Q9BXU1 1019 aa17.9■□□□□ 0.46
GPNMB-203ENST00000409458 GLI3P10071 1580 aa17.89■□□□□ 0.46
GPNMB-203ENST00000409458 PTPRCP08575 1304 aa17.89■□□□□ 0.46
GPNMB-203ENST00000409458 SPATA31A1Q5TZJ5 1347 aa17.89■□□□□ 0.46
GPNMB-203ENST00000409458 AAMPQ13685 434 aa17.89■□□□□ 0.45
GPNMB-203ENST00000409458 ZNF790Q6PG37 636 aa17.88■□□□□ 0.45
GPNMB-203ENST00000409458 TNS2Q63HR2 1409 aa17.88■□□□□ 0.45
GPNMB-203ENST00000409458 CABP4P57796 275 aa17.87■□□□□ 0.45
GPNMB-203ENST00000409458 SPATA31A6Q5VVP1 1343 aa17.87■□□□□ 0.45
GPNMB-203ENST00000409458 UBR2Q8IWV8 1755 aa17.87■□□□□ 0.45
GPNMB-203ENST00000409458 GIGYF1O75420 1035 aaPredicted RBP17.87■□□□□ 0.45
GPNMB-203ENST00000409458 EIF2S2P20042 333 aaKnown RBP17.87■□□□□ 0.45
GPNMB-203ENST00000409458 HSPA1LP34931 641 aa17.87■□□□□ 0.45
GPNMB-203ENST00000409458 SPATA31A5Q5VU36 1347 aa17.86■□□□□ 0.45
GPNMB-203ENST00000409458 SPATA31A7Q8IWB4 1347 aa17.86■□□□□ 0.45
GPNMB-203ENST00000409458 PRAMEF22A3QJZ6 481 aa17.86■□□□□ 0.45
GPNMB-203ENST00000409458 CENPQQ7L2Z9 268 aaPredicted RBP17.86■□□□□ 0.45
GPNMB-203ENST00000409458 C8orf37Q96NL8 207 aa17.86■□□□□ 0.45
GPNMB-203ENST00000409458 PCDHB15Q9Y5E8 787 aa17.86■□□□□ 0.45
GPNMB-203ENST00000409458 N4BP2Q86UW6 1770 aaPredicted RBP17.85■□□□□ 0.45
GPNMB-203ENST00000409458 ERVV-2B6SEH9 535 aa17.85■□□□□ 0.45
GPNMB-203ENST00000409458 FLIIQ13045 1269 aa17.85■□□□□ 0.45
GPNMB-203ENST00000409458 THRAP3Q9Y2W1 955 aaKnown RBP17.85■□□□□ 0.45
GPNMB-203ENST00000409458 LAMB4A4D0S4 1761 aa17.85■□□□□ 0.45
GPNMB-203ENST00000409458 BCL9LQ86UU0 1499 aa17.84■□□□□ 0.45
GPNMB-203ENST00000409458 CHPF2Q9P2E5 772 aa17.84■□□□□ 0.45
GPNMB-203ENST00000409458 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.84■□□□□ 0.45
GPNMB-203ENST00000409458 ITGB4P16144 1822 aa17.84■□□□□ 0.45
GPNMB-203ENST00000409458 IGHDP01880 384 aa17.83■□□□□ 0.45
GPNMB-203ENST00000409458 UNC5CLQ8IV45 518 aa17.83■□□□□ 0.45
GPNMB-203ENST00000409458 ZNF496Q96IT1 587 aaPredicted RBP17.83■□□□□ 0.45
GPNMB-203ENST00000409458 ZBTB40Q9NUA8 1239 aa17.83■□□□□ 0.45
GPNMB-203ENST00000409458 INTS3Q68E01 1043 aaKnown RBP17.83■□□□□ 0.44
GPNMB-203ENST00000409458 TTC5Q8N0Z6 440 aa17.83■□□□□ 0.44
GPNMB-203ENST00000409458 KCPQ6ZWJ8 1503 aa17.83■□□□□ 0.44
GPNMB-203ENST00000409458 ZBTB7BO15156 539 aaPredicted RBP17.82■□□□□ 0.44
GPNMB-203ENST00000409458 NGLY1Q96IV0 654 aa17.82■□□□□ 0.44
GPNMB-203ENST00000409458 CDCA7Q9BWT1 371 aaPredicted RBP17.82■□□□□ 0.44
GPNMB-203ENST00000409458 DOT1LQ8TEK3 1739 aa17.82■□□□□ 0.44
GPNMB-203ENST00000409458 F6X3S4 739 aa17.81■□□□□ 0.44
GPNMB-203ENST00000409458 EXOC5O00471 708 aa17.81■□□□□ 0.44
GPNMB-203ENST00000409458 FKBP5Q13451 457 aaPredicted RBP17.81■□□□□ 0.44
GPNMB-203ENST00000409458 CHMP4AQ9BY43 222 aa17.81■□□□□ 0.44
GPNMB-203ENST00000409458 PHAXQ9H814 394 aaKnown RBP17.81■□□□□ 0.44
GPNMB-203ENST00000409458 CCDC9Q9Y3X0 531 aaKnown RBP17.81■□□□□ 0.44
GPNMB-203ENST00000409458 PXDNLA1KZ92 1463 aa17.81■□□□□ 0.44
GPNMB-203ENST00000409458 ANXA1P04083 346 aa17.8■□□□□ 0.44
GPNMB-203ENST00000409458 BARGINQ6ZT62 677 aa17.8■□□□□ 0.44
GPNMB-203ENST00000409458 FNBP4Q8N3X1 1017 aaPredicted RBP17.8■□□□□ 0.44
GPNMB-203ENST00000409458 FMNL2Q96PY5 1086 aa17.8■□□□□ 0.44
GPNMB-203ENST00000409458 VPS72Q15906 364 aa17.79■□□□□ 0.44
GPNMB-203ENST00000409458 PROSER3Q2NL68 480 aa17.79■□□□□ 0.44
GPNMB-203ENST00000409458 DBF4Q9UBU7 674 aaPredicted RBP17.79■□□□□ 0.44
GPNMB-203ENST00000409458 SKAP1Q86WV1 359 aa17.78■□□□□ 0.44
GPNMB-203ENST00000409458 CHMP4BQ9H444 224 aaKnown RBP17.78■□□□□ 0.44
GPNMB-203ENST00000409458 TMOD3Q9NYL9 352 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms