RNA–Protein interactions for RNA: ENST00000374813.1

HLA-DOA-202, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 303 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-202ENST00000374813 TOGARAM1Q9Y4F4 1720 aa13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 RGPD2P0DJD1 1756 aa13.32□□□□□ -0.28
HLA-DOA-202ENST00000374813 ARFGEF1Q9Y6D6 1849 aa13.32□□□□□ -0.28
HLA-DOA-202ENST00000374813 CD163L1Q9NR16 1453 aa13.32□□□□□ -0.28
HLA-DOA-202ENST00000374813 PRDM10Q9NQV6 1147 aa13.32□□□□□ -0.28
HLA-DOA-202ENST00000374813 KIAA1551Q9HCM1 1747 aa13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 KCNA3P22001 575 aa13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 ATP6V1AP38606 617 aa13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 DCAF5Q96JK2 942 aa13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 RTCBQ9Y3I0 505 aaKnown RBP13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 ROCK2O75116 1388 aaKnown RBP13.31□□□□□ -0.28
HLA-DOA-202ENST00000374813 SMG6Q86US8 1419 aaKnown RBP13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 ITGB4P16144 1822 aa13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 BRCA1P38398 1863 aaKnown RBP13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 CYP27B1O15528 508 aa13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 ADRA2BP18089 450 aa13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 USHBP1Q8N6Y0 703 aa13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 PKD1L3Q7Z443 1732 aa13.3□□□□□ -0.28
HLA-DOA-202ENST00000374813 SBF1O95248 1867 aa13.29□□□□□ -0.28
HLA-DOA-202ENST00000374813 GLTPD2A6NH11 291 aa13.29□□□□□ -0.28
HLA-DOA-202ENST00000374813 NKX1-1Q15270 411 aaPredicted RBP13.29□□□□□ -0.28
HLA-DOA-202ENST00000374813 PUS7Q96PZ0 661 aaKnown RBP13.29□□□□□ -0.28
HLA-DOA-202ENST00000374813 RTL1A6NKG5 1358 aa13.29□□□□□ -0.28
HLA-DOA-202ENST00000374813 RFC4P35249 363 aa13.28□□□□□ -0.28
HLA-DOA-202ENST00000374813 L3MBTL2Q969R5 705 aa13.28□□□□□ -0.28
HLA-DOA-202ENST00000374813 TMOD3Q9NYL9 352 aa13.28□□□□□ -0.28
HLA-DOA-202ENST00000374813 MAP2P11137 1827 aaKnown RBP13.27□□□□□ -0.28
HLA-DOA-202ENST00000374813 ITPK1Q13572 414 aa13.27□□□□□ -0.29
HLA-DOA-202ENST00000374813 ARHGEF1Q92888 912 aaKnown RBP13.27□□□□□ -0.29
HLA-DOA-202ENST00000374813 CREBZFQ9NS37 354 aa13.27□□□□□ -0.29
HLA-DOA-202ENST00000374813 A0A1W2PP64 1363 aa13.27□□□□□ -0.29
HLA-DOA-202ENST00000374813 GYS1P13807 737 aa13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 FBLN1P23142 703 aa13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 CTCFP49711 727 aaPredicted RBP13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 RC3H1Q5TC82 1133 aaKnown RBP13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 AIDAQ96BJ3 306 aa13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 ASAP1Q9ULH1 1129 aa13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 SPG7Q9UQ90 795 aa13.26□□□□□ -0.29
HLA-DOA-202ENST00000374813 LMNB1P20700 586 aa13.25□□□□□ -0.29
HLA-DOA-202ENST00000374813 C4AP0C0L4 1744 aa13.25□□□□□ -0.29
HLA-DOA-202ENST00000374813 FOXN1O15353 648 aa13.24□□□□□ -0.29
HLA-DOA-202ENST00000374813 RRS1Q15050 365 aaKnown RBP13.24□□□□□ -0.29
HLA-DOA-202ENST00000374813 FAM161AQ3B820 660 aa13.24□□□□□ -0.29
HLA-DOA-202ENST00000374813 DPY19L2Q6NUT2 758 aa13.24□□□□□ -0.29
HLA-DOA-202ENST00000374813 RPS6KA4O75676 772 aa13.23□□□□□ -0.29
HLA-DOA-202ENST00000374813 MKRN1Q9UHC7 482 aaKnown RBP13.23□□□□□ -0.29
HLA-DOA-202ENST00000374813 INSRP06213 1382 aa13.22□□□□□ -0.29
HLA-DOA-202ENST00000374813 MLLT1Q03111 559 aaPredicted RBP13.22□□□□□ -0.29
HLA-DOA-202ENST00000374813 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.22□□□□□ -0.29
HLA-DOA-202ENST00000374813 HSP90AB2PQ58FF8 381 aa13.21□□□□□ -0.29
HLA-DOA-202ENST00000374813 ATG3Q9NT62 314 aa13.21□□□□□ -0.29
HLA-DOA-202ENST00000374813 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
HLA-DOA-202ENST00000374813 KIF24Q5T7B8 1368 aa13.2□□□□□ -0.3
HLA-DOA-202ENST00000374813 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
HLA-DOA-202ENST00000374813 CHADLQ6NUI6 762 aa13.2□□□□□ -0.3
HLA-DOA-202ENST00000374813 IFNL2Q8IZJ0 200 aa13.2□□□□□ -0.3
HLA-DOA-202ENST00000374813 ABHD8Q96I13 439 aa13.2□□□□□ -0.3
HLA-DOA-202ENST00000374813 CNTNAP4Q9C0A0 1308 aa13.19□□□□□ -0.3
HLA-DOA-202ENST00000374813 CHRNA5P30532 468 aa13.19□□□□□ -0.3
HLA-DOA-202ENST00000374813 RBM42Q9BTD8 480 aaKnown RBP13.19□□□□□ -0.3
HLA-DOA-202ENST00000374813 FLT4P35916 1363 aa13.19□□□□□ -0.3
HLA-DOA-202ENST00000374813 CNTNAP1P78357 1384 aa13.19□□□□□ -0.3
HLA-DOA-202ENST00000374813 POTECB2RU33 542 aa13.18□□□□□ -0.3
HLA-DOA-202ENST00000374813 RGS19P49795 217 aa13.18□□□□□ -0.3
HLA-DOA-202ENST00000374813 RASSF7Q02833 373 aa13.18□□□□□ -0.3
HLA-DOA-202ENST00000374813 CARD11Q9BXL7 1154 aa13.18□□□□□ -0.3
HLA-DOA-202ENST00000374813 FYB1O15117 783 aa13.17□□□□□ -0.3
HLA-DOA-202ENST00000374813 LBX1P52954 281 aa13.17□□□□□ -0.3
HLA-DOA-202ENST00000374813 WBP1LQ9NX94 342 aa13.17□□□□□ -0.3
HLA-DOA-202ENST00000374813 CCDC88AQ3V6T2 1871 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 ZNF831Q5JPB2 1677 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 ERVV-2B6SEH9 535 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 PHKG2P15735 406 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 FKBP8Q14318 412 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 TTLL6Q8N841 843 aa13.16□□□□□ -0.3
HLA-DOA-202ENST00000374813 VEGFBP49765 207 aa13.15□□□□□ -0.3
HLA-DOA-202ENST00000374813 DDR1Q08345 913 aa13.15□□□□□ -0.3
HLA-DOA-202ENST00000374813 SLC4A9Q96Q91 983 aa13.15□□□□□ -0.3
HLA-DOA-202ENST00000374813 GGNBP2Q9H3C7 697 aa13.15□□□□□ -0.3
HLA-DOA-202ENST00000374813 KDRP35968 1356 aa13.15□□□□□ -0.3
HLA-DOA-202ENST00000374813 USP42Q9H9J4 1324 aaKnown RBP13.14□□□□□ -0.31
HLA-DOA-202ENST00000374813 POLRMTO00411 1230 aaKnown RBP13.14□□□□□ -0.31
HLA-DOA-202ENST00000374813 TM4SF1P30408 202 aa13.14□□□□□ -0.31
HLA-DOA-202ENST00000374813 MAP2K1Q02750 393 aaPredicted RBP13.14□□□□□ -0.31
HLA-DOA-202ENST00000374813 TONSLQ96HA7 1378 aa13.14□□□□□ -0.31
HLA-DOA-202ENST00000374813 MYH14Q7Z406 1995 aaKnown RBP13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 CCDC85CA6NKD9 419 aa13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 TMEM88BA6NKF7 163 aa13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 ZPR1O75312 459 aa13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 HSP90AB1P08238 724 aaKnown RBP13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 SRP68Q9UHB9 627 aaKnown RBP13.13□□□□□ -0.31
HLA-DOA-202ENST00000374813 ERFEQ4G0M1 354 aa13.12□□□□□ -0.31
HLA-DOA-202ENST00000374813 PDE4DIPQ5VU43 2346 aa13.12□□□□□ -0.31
HLA-DOA-202ENST00000374813 COL5A3P25940 1745 aaPredicted RBP13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 IQCA1LA6NCM1 817 aa13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 H0YIN7 160 aa13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 NCAPD2Q15021 1401 aa13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 PASKQ96RG2 1323 aa13.11□□□□□ -0.31
HLA-DOA-202ENST00000374813 NFKBIEO00221 500 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms