RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 NWD1Q149M9 1564 aa17.55■□□□□ 0.4
CD48-201ENST00000368045 F6X3S4 739 aa17.55■□□□□ 0.4
CD48-201ENST00000368045 ATP8B2P98198 1209 aa17.55■□□□□ 0.4
CD48-201ENST00000368045 BAG4O95429 457 aaKnown RBP17.54■□□□□ 0.4
CD48-201ENST00000368045 CYP2E1P05181 493 aaPredicted RBP17.54■□□□□ 0.4
CD48-201ENST00000368045 KLHL40Q2TBA0 621 aa17.54■□□□□ 0.4
CD48-201ENST00000368045 LRRCC1Q9C099 1032 aa17.54■□□□□ 0.4
CD48-201ENST00000368045 FAM208AQ9UK61 1670 aaKnown RBP17.54■□□□□ 0.4
CD48-201ENST00000368045 AOX1Q06278 1338 aa17.54■□□□□ 0.4
CD48-201ENST00000368045 APBB1O00213 710 aa17.53■□□□□ 0.4
CD48-201ENST00000368045 CEBPAP49715 358 aaPredicted RBP17.53■□□□□ 0.4
CD48-201ENST00000368045 CHMP4AQ9BY43 222 aa17.53■□□□□ 0.4
CD48-201ENST00000368045 PANK2Q9BZ23 570 aa17.53■□□□□ 0.4
CD48-201ENST00000368045 SRCIN1Q9C0H9 1055 aa17.53■□□□□ 0.4
CD48-201ENST00000368045 FKBP5Q13451 457 aaPredicted RBP17.53■□□□□ 0.4
CD48-201ENST00000368045 TAF7Q15545 349 aaPredicted RBP17.53■□□□□ 0.4
CD48-201ENST00000368045 MCM2P49736 904 aa17.52■□□□□ 0.4
CD48-201ENST00000368045 RRAGDQ9NQL2 400 aaPredicted RBP17.52■□□□□ 0.4
CD48-201ENST00000368045 STAP2Q9UGK3 403 aa17.52■□□□□ 0.4
CD48-201ENST00000368045 ARXQ96QS3 562 aa17.51■□□□□ 0.39
CD48-201ENST00000368045 N4BP2Q86UW6 1770 aaPredicted RBP17.51■□□□□ 0.39
CD48-201ENST00000368045 EPB41L2O43491 1005 aaKnown RBP17.51■□□□□ 0.39
CD48-201ENST00000368045 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
CD48-201ENST00000368045 MX1P20591 662 aa17.5■□□□□ 0.39
CD48-201ENST00000368045 MCCP23508 829 aa17.5■□□□□ 0.39
CD48-201ENST00000368045 ANAPC15P60006 121 aa17.5■□□□□ 0.39
CD48-201ENST00000368045 IL17REQ8NFR9 667 aa17.5■□□□□ 0.39
CD48-201ENST00000368045 IL17RAQ96F46 866 aa17.5■□□□□ 0.39
CD48-201ENST00000368045 ESYT1Q9BSJ8 1104 aa17.49■□□□□ 0.39
CD48-201ENST00000368045 ANO8Q9HCE9 1232 aaPredicted RBP17.49■□□□□ 0.39
CD48-201ENST00000368045 MARF1Q9Y4F3 1742 aaKnown RBP17.49■□□□□ 0.39
CD48-201ENST00000368045 CACNA1FO60840 1977 aa17.49■□□□□ 0.39
CD48-201ENST00000368045 HOXB7P09629 217 aa17.48■□□□□ 0.39
CD48-201ENST00000368045 EXOC6BQ9Y2D4 811 aa17.48■□□□□ 0.39
CD48-201ENST00000368045 DDX49Q9Y6V7 483 aaKnown RBP17.48■□□□□ 0.39
CD48-201ENST00000368045 RGPD8O14715 1765 aaPredicted RBP17.48■□□□□ 0.39
CD48-201ENST00000368045 RAB11FIP3O75154 756 aa17.47■□□□□ 0.39
CD48-201ENST00000368045 CLCN1P35523 988 aa17.47■□□□□ 0.39
CD48-201ENST00000368045 GAS2L3Q86XJ1 694 aa17.47■□□□□ 0.39
CD48-201ENST00000368045 ABTB2Q8N961 1025 aa17.47■□□□□ 0.39
CD48-201ENST00000368045 CEMIPQ8WUJ3 1361 aa17.46■□□□□ 0.39
CD48-201ENST00000368045 PNMA6EA0A0J9YXQ4 647 aa17.46■□□□□ 0.39
CD48-201ENST00000368045 UBTFL1P0CB47 393 aaPredicted RBP17.46■□□□□ 0.39
CD48-201ENST00000368045 KCNA6P17658 529 aa17.46■□□□□ 0.39
CD48-201ENST00000368045 SSH3Q8TE77 659 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 FER1L4A9Z1Z3 1794 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 CHMLP26374 656 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 ZNF445P59923 1031 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 HDGFL1Q5TGJ6 251 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 IP6K1Q92551 441 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 USP44Q9H0E7 712 aa17.45■□□□□ 0.38
CD48-201ENST00000368045 LRRFIP2Q9Y608 721 aaKnown RBP17.45■□□□□ 0.38
CD48-201ENST00000368045 MED1Q15648 1581 aaPredicted RBP17.44■□□□□ 0.38
CD48-201ENST00000368045 MCTP1Q6DN14 999 aa17.44■□□□□ 0.38
CD48-201ENST00000368045 LMBRD1Q9NUN5 540 aa17.44■□□□□ 0.38
CD48-201ENST00000368045 ADGRL3Q9HAR2 1447 aa17.44■□□□□ 0.38
CD48-201ENST00000368045 TUBGCP6Q96RT7 1819 aa17.43■□□□□ 0.38
CD48-201ENST00000368045 CUL4AQ13619 759 aa17.43■□□□□ 0.38
CD48-201ENST00000368045 POLA2Q14181 598 aa17.43■□□□□ 0.38
CD48-201ENST00000368045 INTS4Q96HW7 963 aaKnown RBP17.43■□□□□ 0.38
CD48-201ENST00000368045 PHF8Q9UPP1 1060 aa17.43■□□□□ 0.38
CD48-201ENST00000368045 NEK4P51957 841 aa17.42■□□□□ 0.38
CD48-201ENST00000368045 CCDC173Q0VFZ6 552 aa17.42■□□□□ 0.38
CD48-201ENST00000368045 ZGPATQ8N5A5 531 aaKnown RBP17.42■□□□□ 0.38
CD48-201ENST00000368045 TRIM44Q96DX7 344 aaPredicted RBP17.41■□□□□ 0.38
CD48-201ENST00000368045 TMX3Q96JJ7 454 aa17.41■□□□□ 0.38
CD48-201ENST00000368045 NFAT5O94916 1531 aa17.41■□□□□ 0.38
CD48-201ENST00000368045 TRIM6-TRIM34B2RNG4 842 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 NUTM2GQ5VZR2 741 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 KCNH5Q8NCM2 988 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 ANP32BQ92688 251 aaKnown RBP17.4■□□□□ 0.38
CD48-201ENST00000368045 NECTIN2Q92692 538 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 PPP1R9BQ96SB3 815 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 ESPNB1AK53 854 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 NASPP49321 788 aaPredicted RBP17.4■□□□□ 0.38
CD48-201ENST00000368045 EIF4A1P60842 406 aaKnown RBP17.4■□□□□ 0.38
CD48-201ENST00000368045 HSP90AB4PQ58FF6 505 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 RILPL2Q969X0 211 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 LTV1Q96GA3 475 aaPredicted RBP17.4■□□□□ 0.38
CD48-201ENST00000368045 ANO2Q9NQ90 1003 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 ZDHHC9Q9Y397 364 aa17.4■□□□□ 0.38
CD48-201ENST00000368045 PHRF1Q9P1Y6 1649 aaKnown RBP17.39■□□□□ 0.37
CD48-201ENST00000368045 OVOS2A0A0G2JMS6 1433 aa17.39■□□□□ 0.37
CD48-201ENST00000368045 PKP1Q13835 747 aa17.38■□□□□ 0.37
CD48-201ENST00000368045 TSHZ3Q63HK5 1081 aa17.38■□□□□ 0.37
CD48-201ENST00000368045 KIF1BPQ96EK5 621 aa17.38■□□□□ 0.37
CD48-201ENST00000368045 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.38■□□□□ 0.37
CD48-201ENST00000368045 NCAPD2Q15021 1401 aa17.38■□□□□ 0.37
CD48-201ENST00000368045 PPP1R42Q7Z4L9 355 aa17.38■□□□□ 0.37
CD48-201ENST00000368045 BRD1O95696 1058 aa17.37■□□□□ 0.37
CD48-201ENST00000368045 ZSCAN23Q3MJ62 389 aa17.37■□□□□ 0.37
CD48-201ENST00000368045 AKAP4Q5JQC9 854 aa17.37■□□□□ 0.37
CD48-201ENST00000368045 DNAAF4Q8WXU2 420 aa17.37■□□□□ 0.37
CD48-201ENST00000368045 PHAXQ9H814 394 aaKnown RBP17.37■□□□□ 0.37
CD48-201ENST00000368045 USP42Q9H9J4 1324 aaKnown RBP17.36■□□□□ 0.37
CD48-201ENST00000368045 MBD3O95983 291 aa17.36■□□□□ 0.37
CD48-201ENST00000368045 AMOTQ4VCS5 1084 aa17.36■□□□□ 0.37
CD48-201ENST00000368045 BEND3Q5T5X7 828 aa17.36■□□□□ 0.37
CD48-201ENST00000368045 CAVIN1Q6NZI2 390 aaKnown RBP17.36■□□□□ 0.37
CD48-201ENST00000368045 RHPN1Q8TCX5 695 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms