RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 B4GALNT3Q6L9W6 998 aa29.72■■■□□ 2.35
SDF4-202ENST00000360001 TCERG1O14776 1098 aaKnown RBP29.71■■■□□ 2.35
SDF4-202ENST00000360001 MRC1P22897 1456 aa29.7■■■□□ 2.35
SDF4-202ENST00000360001 RLBP1P12271 317 aa29.7■■■□□ 2.35
SDF4-202ENST00000360001 HSPA1LP34931 641 aa29.7■■■□□ 2.34
SDF4-202ENST00000360001 SPATA31A6Q5VVP1 1343 aa29.69■■■□□ 2.34
SDF4-202ENST00000360001 ATF7IPQ6VMQ6 1270 aa29.69■■■□□ 2.34
SDF4-202ENST00000360001 SLC52A2Q9HAB3 445 aa29.69■■■□□ 2.34
SDF4-202ENST00000360001 WNK3Q9BYP7 1800 aa29.69■■■□□ 2.34
SDF4-202ENST00000360001 TRIM27P14373 513 aa29.68■■■□□ 2.34
SDF4-202ENST00000360001 IPO8O15397 1037 aaKnown RBP29.68■■■□□ 2.34
SDF4-202ENST00000360001 KCNQ3O43525 872 aa29.68■■■□□ 2.34
SDF4-202ENST00000360001 EIF4A1P60842 406 aaKnown RBP29.68■■■□□ 2.34
SDF4-202ENST00000360001 SOS1Q07889 1333 aaPredicted RBP29.68■■■□□ 2.34
SDF4-202ENST00000360001 CLUAP1Q96AJ1 413 aa29.67■■■□□ 2.34
SDF4-202ENST00000360001 LRP6O75581 1613 aa29.66■■■□□ 2.34
SDF4-202ENST00000360001 NKX1-1Q15270 411 aaPredicted RBP29.66■■■□□ 2.34
SDF4-202ENST00000360001 DZIP1LQ8IYY4 767 aaKnown RBP29.66■■■□□ 2.34
SDF4-202ENST00000360001 COG6Q9Y2V7 657 aa29.66■■■□□ 2.34
SDF4-202ENST00000360001 SPATA31A1Q5TZJ5 1347 aa29.66■■■□□ 2.34
SDF4-202ENST00000360001 MS4A1P11836 297 aa29.65■■■□□ 2.34
SDF4-202ENST00000360001 CCDC136Q96JN2 1154 aa29.65■■■□□ 2.34
SDF4-202ENST00000360001 NFATC2IPQ8NCF5 419 aa29.64■■■□□ 2.34
SDF4-202ENST00000360001 ARHGAP45Q92619 1136 aa29.64■■■□□ 2.34
SDF4-202ENST00000360001 DDX54Q8TDD1 881 aaKnown RBP29.63■■■□□ 2.33
SDF4-202ENST00000360001 FTSJ3Q8IY81 847 aaKnown RBP29.63■■■□□ 2.33
SDF4-202ENST00000360001 C8orf37Q96NL8 207 aa29.63■■■□□ 2.33
SDF4-202ENST00000360001 SPATA31A5Q5VU36 1347 aa29.62■■■□□ 2.33
SDF4-202ENST00000360001 SPATA31A7Q8IWB4 1347 aa29.62■■■□□ 2.33
SDF4-202ENST00000360001 THRAP3Q9Y2W1 955 aaKnown RBP29.61■■■□□ 2.33
SDF4-202ENST00000360001 NGLY1Q96IV0 654 aa29.61■■■□□ 2.33
SDF4-202ENST00000360001 HEG1Q9ULI3 1381 aa29.6■■■□□ 2.33
SDF4-202ENST00000360001 UNC5CLQ8IV45 518 aa29.6■■■□□ 2.33
SDF4-202ENST00000360001 BCL9LQ86UU0 1499 aa29.6■■■□□ 2.33
SDF4-202ENST00000360001 HOXB7P09629 217 aa29.59■■■□□ 2.33
SDF4-202ENST00000360001 CABP4P57796 275 aa29.58■■■□□ 2.33
SDF4-202ENST00000360001 MVPQ14764 893 aaKnown RBP29.58■■■□□ 2.33
SDF4-202ENST00000360001 CCDC30Q5VVM6 783 aa29.58■■■□□ 2.33
SDF4-202ENST00000360001 FNBP4Q8N3X1 1017 aaPredicted RBP29.58■■■□□ 2.33
SDF4-202ENST00000360001 ERVV-2B6SEH9 535 aa29.57■■■□□ 2.32
SDF4-202ENST00000360001 ZNF790Q6PG37 636 aa29.57■■■□□ 2.32
SDF4-202ENST00000360001 CDCA7Q9BWT1 371 aaPredicted RBP29.57■■■□□ 2.32
SDF4-202ENST00000360001 SLC4A2P04920 1241 aa29.57■■■□□ 2.32
SDF4-202ENST00000360001 SLC39A6Q13433 755 aa29.56■■■□□ 2.32
SDF4-202ENST00000360001 TOGARAM1Q9Y4F4 1720 aa29.56■■■□□ 2.32
SDF4-202ENST00000360001 TNS2Q63HR2 1409 aa29.56■■■□□ 2.32
SDF4-202ENST00000360001 CACNA1FO60840 1977 aa29.55■■■□□ 2.32
SDF4-202ENST00000360001 TMEM57Q8N5G2 664 aa29.55■■■□□ 2.32
SDF4-202ENST00000360001 STK31Q9BXU1 1019 aa29.55■■■□□ 2.32
SDF4-202ENST00000360001 EXOC5O00471 708 aa29.54■■■□□ 2.32
SDF4-202ENST00000360001 HDGFL1Q5TGJ6 251 aa29.54■■■□□ 2.32
SDF4-202ENST00000360001 API5Q9BZZ5 524 aaKnown RBP29.54■■■□□ 2.32
SDF4-202ENST00000360001 ABCC4O15439 1325 aa29.54■■■□□ 2.32
SDF4-202ENST00000360001 GIGYF1O75420 1035 aaPredicted RBP29.53■■■□□ 2.32
SDF4-202ENST00000360001 NECTIN2Q92692 538 aa29.53■■■□□ 2.32
SDF4-202ENST00000360001 CCDC9Q9Y3X0 531 aaKnown RBP29.53■■■□□ 2.32
SDF4-202ENST00000360001 BARGINQ6ZT62 677 aa29.53■■■□□ 2.32
SDF4-202ENST00000360001 RGS12O14924 1447 aa29.53■■■□□ 2.32
SDF4-202ENST00000360001 VPS72Q15906 364 aa29.52■■■□□ 2.32
SDF4-202ENST00000360001 PTPRCP08575 1304 aa29.52■■■□□ 2.32
SDF4-202ENST00000360001 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.52■■■□□ 2.32
SDF4-202ENST00000360001 G2E3Q7L622 706 aa29.51■■■□□ 2.31
SDF4-202ENST00000360001 ITPRIPQ8IWB1 547 aa29.51■■■□□ 2.31
SDF4-202ENST00000360001 AAMPQ13685 434 aa29.5■■■□□ 2.31
SDF4-202ENST00000360001 EIF2S2P20042 333 aaKnown RBP29.49■■■□□ 2.31
SDF4-202ENST00000360001 CHMP4AQ9BY43 222 aa29.49■■■□□ 2.31
SDF4-202ENST00000360001 DDX19BQ9UMR2 479 aa29.49■■■□□ 2.31
SDF4-202ENST00000360001 PAPPAQ13219 1627 aa29.48■■■□□ 2.31
SDF4-202ENST00000360001 ZNF496Q96IT1 587 aaPredicted RBP29.48■■■□□ 2.31
SDF4-202ENST00000360001 PRAMEF22A3QJZ6 481 aa29.48■■■□□ 2.31
SDF4-202ENST00000360001 TTC5Q8N0Z6 440 aa29.48■■■□□ 2.31
SDF4-202ENST00000360001 USP21Q9UK80 565 aa29.48■■■□□ 2.31
SDF4-202ENST00000360001 C5P01031 1676 aa29.47■■■□□ 2.31
SDF4-202ENST00000360001 DDB1Q16531 1140 aa29.46■■■□□ 2.31
SDF4-202ENST00000360001 MEX3CQ5U5Q3 659 aaKnown RBP29.46■■■□□ 2.31
SDF4-202ENST00000360001 GLI3P10071 1580 aa29.46■■■□□ 2.31
SDF4-202ENST00000360001 UBR2Q8IWV8 1755 aa29.46■■■□□ 2.31
SDF4-202ENST00000360001 FLIIQ13045 1269 aa29.45■■■□□ 2.31
SDF4-202ENST00000360001 CHPF2Q9P2E5 772 aa29.44■■■□□ 2.3
SDF4-202ENST00000360001 ITGB4P16144 1822 aa29.44■■■□□ 2.3
SDF4-202ENST00000360001 FMNL2Q96PY5 1086 aa29.44■■■□□ 2.3
SDF4-202ENST00000360001 TMOD3Q9NYL9 352 aa29.43■■■□□ 2.3
SDF4-202ENST00000360001 FAM98CQ17RN3 349 aaKnown RBP29.41■■■□□ 2.3
SDF4-202ENST00000360001 INTS3Q68E01 1043 aaKnown RBP29.41■■■□□ 2.3
SDF4-202ENST00000360001 KCPQ6ZWJ8 1503 aa29.41■■■□□ 2.3
SDF4-202ENST00000360001 KDM2BQ8NHM5 1336 aa29.41■■■□□ 2.3
SDF4-202ENST00000360001 SNRPA1P09661 255 aaKnown RBP29.4■■■□□ 2.3
SDF4-202ENST00000360001 PHAXQ9H814 394 aaKnown RBP29.4■■■□□ 2.3
SDF4-202ENST00000360001 ZBTB40Q9NUA8 1239 aa29.4■■■□□ 2.3
SDF4-202ENST00000360001 DBF4Q9UBU7 674 aaPredicted RBP29.4■■■□□ 2.3
SDF4-202ENST00000360001 AFF2P51816 1311 aa29.4■■■□□ 2.3
SDF4-202ENST00000360001 PIGBQ92521 554 aa29.39■■■□□ 2.3
SDF4-202ENST00000360001 PCDHB15Q9Y5E8 787 aa29.39■■■□□ 2.3
SDF4-202ENST00000360001 MARCH10Q8NA82 808 aaPredicted RBP29.39■■■□□ 2.29
SDF4-202ENST00000360001 ZBTB7BO15156 539 aaPredicted RBP29.38■■■□□ 2.29
SDF4-202ENST00000360001 FKBP5Q13451 457 aaPredicted RBP29.38■■■□□ 2.29
SDF4-202ENST00000360001 DOT1LQ8TEK3 1739 aa29.38■■■□□ 2.29
SDF4-202ENST00000360001 F6X3S4 739 aa29.37■■■□□ 2.29
SDF4-202ENST00000360001 ANXA1P04083 346 aa29.37■■■□□ 2.29
SDF4-202ENST00000360001 BCL9O00512 1426 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 183.4 ms