RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 CCDC9Q9Y3X0 531 aaKnown RBP23.4■■□□□ 1.34
SMARCD3-202ENST00000356800 TOGARAM1Q9Y4F4 1720 aa23.39■■□□□ 1.34
SMARCD3-202ENST00000356800 SSH1Q8WYL5 1049 aa23.39■■□□□ 1.34
SMARCD3-202ENST00000356800 TNS2Q63HR2 1409 aa23.39■■□□□ 1.33
SMARCD3-202ENST00000356800 BARGINQ6ZT62 677 aa23.38■■□□□ 1.33
SMARCD3-202ENST00000356800 CDCA7Q9BWT1 371 aaPredicted RBP23.38■■□□□ 1.33
SMARCD3-202ENST00000356800 SLC52A2Q9HAB3 445 aa23.38■■□□□ 1.33
SMARCD3-202ENST00000356800 BTBD11A6QL63 1104 aa23.38■■□□□ 1.33
SMARCD3-202ENST00000356800 KCNQ3O43525 872 aa23.38■■□□□ 1.33
SMARCD3-202ENST00000356800 AFF2P51816 1311 aa23.37■■□□□ 1.33
SMARCD3-202ENST00000356800 ZNF428Q96B54 188 aa23.37■■□□□ 1.33
SMARCD3-202ENST00000356800 NFATC2IPQ8NCF5 419 aa23.36■■□□□ 1.33
SMARCD3-202ENST00000356800 EXOC5O00471 708 aa23.35■■□□□ 1.33
SMARCD3-202ENST00000356800 ALDH1L2Q3SY69 923 aa23.35■■□□□ 1.33
SMARCD3-202ENST00000356800 SMC4Q9NTJ3 1288 aa23.35■■□□□ 1.33
SMARCD3-202ENST00000356800 C20orf194Q5TEA3 1177 aa23.35■■□□□ 1.33
SMARCD3-202ENST00000356800 EIF4A1P60842 406 aaKnown RBP23.34■■□□□ 1.33
SMARCD3-202ENST00000356800 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.34■■□□□ 1.33
SMARCD3-202ENST00000356800 GLI3P10071 1580 aa23.34■■□□□ 1.33
SMARCD3-202ENST00000356800 ITGB4P16144 1822 aa23.32■■□□□ 1.32
SMARCD3-202ENST00000356800 FAM98CQ17RN3 349 aaKnown RBP23.32■■□□□ 1.32
SMARCD3-202ENST00000356800 ERVV-2B6SEH9 535 aa23.32■■□□□ 1.32
SMARCD3-202ENST00000356800 CABP4P57796 275 aa23.32■■□□□ 1.32
SMARCD3-202ENST00000356800 DDB1Q16531 1140 aa23.32■■□□□ 1.32
SMARCD3-202ENST00000356800 ATRNO75882 1429 aa23.31■■□□□ 1.32
SMARCD3-202ENST00000356800 TCERG1O14776 1098 aaKnown RBP23.31■■□□□ 1.32
SMARCD3-202ENST00000356800 MRPL50Q8N5N7 158 aaKnown RBP23.31■■□□□ 1.32
SMARCD3-202ENST00000356800 FRAT1Q92837 279 aaPredicted RBP23.31■■□□□ 1.32
SMARCD3-202ENST00000356800 THSD7AQ9UPZ6 1657 aa23.3■■□□□ 1.32
SMARCD3-202ENST00000356800 BRPF1P55201 1214 aaPredicted RBP23.3■■□□□ 1.32
SMARCD3-202ENST00000356800 SLC39A6Q13433 755 aa23.3■■□□□ 1.32
SMARCD3-202ENST00000356800 PAPPAQ13219 1627 aa23.3■■□□□ 1.32
SMARCD3-202ENST00000356800 HEG1Q9ULI3 1381 aa23.29■■□□□ 1.32
SMARCD3-202ENST00000356800 ZNF790Q6PG37 636 aa23.28■■□□□ 1.32
SMARCD3-202ENST00000356800 TNNQ9UQP3 1299 aa23.28■■□□□ 1.32
SMARCD3-202ENST00000356800 SOS1Q07889 1333 aaPredicted RBP23.28■■□□□ 1.32
SMARCD3-202ENST00000356800 PPP4R2Q9NY27 417 aa23.28■■□□□ 1.32
SMARCD3-202ENST00000356800 DOT1LQ8TEK3 1739 aa23.28■■□□□ 1.32
SMARCD3-202ENST00000356800 UBR2Q8IWV8 1755 aa23.27■■□□□ 1.32
SMARCD3-202ENST00000356800 MARCH10Q8NA82 808 aaPredicted RBP23.27■■□□□ 1.32
SMARCD3-202ENST00000356800 FBXO41Q8TF61 875 aa23.27■■□□□ 1.32
SMARCD3-202ENST00000356800 GJD4Q96KN9 370 aaPredicted RBP23.27■■□□□ 1.32
SMARCD3-202ENST00000356800 NOB1Q9ULX3 412 aaKnown RBP23.27■■□□□ 1.32
SMARCD3-202ENST00000356800 C5P01031 1676 aa23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 CANXP27824 592 aaKnown RBP23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 EXOC6Q8TAG9 804 aa23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 KAT6BQ8WYB5 2073 aa23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 CACNA1FO60840 1977 aa23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 KIF16BQ96L93 1317 aa23.26■■□□□ 1.31
SMARCD3-202ENST00000356800 ZKSCAN2Q63HK3 967 aa23.25■■□□□ 1.31
SMARCD3-202ENST00000356800 CRBNQ96SW2 442 aa23.25■■□□□ 1.31
SMARCD3-202ENST00000356800 TRPC5Q9UL62 973 aaPredicted RBP23.25■■□□□ 1.31
SMARCD3-202ENST00000356800 PDE3AQ14432 1141 aa23.25■■□□□ 1.31
SMARCD3-202ENST00000356800 HOXB7P09629 217 aa23.24■■□□□ 1.31
SMARCD3-202ENST00000356800 PANK1Q8TE04 598 aa23.24■■□□□ 1.31
SMARCD3-202ENST00000356800 GIGYF1O75420 1035 aaPredicted RBP23.23■■□□□ 1.31
SMARCD3-202ENST00000356800 RLBP1P12271 317 aa23.23■■□□□ 1.31
SMARCD3-202ENST00000356800 TRIM27P14373 513 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 ZNF496Q96IT1 587 aaPredicted RBP23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 PRAMEF22A3QJZ6 481 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 ATF7IPQ6VMQ6 1270 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 NECTIN2Q92692 538 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 QTRT2Q9H974 415 aaKnown RBP23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 TMOD3Q9NYL9 352 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 KCPQ6ZWJ8 1503 aa23.22■■□□□ 1.31
SMARCD3-202ENST00000356800 CCDC30Q5VVM6 783 aa23.21■■□□□ 1.31
SMARCD3-202ENST00000356800 PIGBQ92521 554 aa23.21■■□□□ 1.31
SMARCD3-202ENST00000356800 IPO8O15397 1037 aaKnown RBP23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 SLC4A2P04920 1241 aa23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 HDGFL1Q5TGJ6 251 aa23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 TTC5Q8N0Z6 440 aa23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 CLUAP1Q96AJ1 413 aa23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 BCL9O00512 1426 aa23.2■■□□□ 1.3
SMARCD3-202ENST00000356800 ONECUT3O60422 494 aaPredicted RBP23.19■■□□□ 1.3
SMARCD3-202ENST00000356800 ARHGAP45Q92619 1136 aa23.19■■□□□ 1.3
SMARCD3-202ENST00000356800 A0A0G2JS52 829 aa23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 EIF2S2P20042 333 aaKnown RBP23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 MYT1Q01538 1121 aa23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 G2E3Q7L622 706 aa23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 DZIP1LQ8IYY4 767 aaKnown RBP23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 FMNL2Q96PY5 1086 aa23.18■■□□□ 1.3
SMARCD3-202ENST00000356800 LAMB4A4D0S4 1761 aa23.17■■□□□ 1.3
SMARCD3-202ENST00000356800 PRIM1P49642 420 aaKnown RBP23.17■■□□□ 1.3
SMARCD3-202ENST00000356800 STK31Q9BXU1 1019 aa23.17■■□□□ 1.3
SMARCD3-202ENST00000356800 COG6Q9Y2V7 657 aa23.17■■□□□ 1.3
SMARCD3-202ENST00000356800 RGS12O14924 1447 aa23.16■■□□□ 1.3
SMARCD3-202ENST00000356800 ASAP1Q9ULH1 1129 aa23.16■■□□□ 1.3
SMARCD3-202ENST00000356800 ATG3Q9NT62 314 aa23.15■■□□□ 1.3
SMARCD3-202ENST00000356800 SNRPA1P09661 255 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-202ENST00000356800 MS4A1P11836 297 aa23.14■■□□□ 1.29
SMARCD3-202ENST00000356800 FTSJ3Q8IY81 847 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-202ENST00000356800 ACSBG1Q96GR2 724 aa23.14■■□□□ 1.29
SMARCD3-202ENST00000356800 CHPF2Q9P2E5 772 aa23.14■■□□□ 1.29
SMARCD3-202ENST00000356800 SYTL4Q96C24 671 aaPredicted RBP23.13■■□□□ 1.29
SMARCD3-202ENST00000356800 SEPT12Q8IYM1 358 aa23.13■■□□□ 1.29
SMARCD3-202ENST00000356800 USP16Q9Y5T5 823 aa23.13■■□□□ 1.29
SMARCD3-202ENST00000356800 ABCC4O15439 1325 aa23.12■■□□□ 1.29
SMARCD3-202ENST00000356800 PTPRCP08575 1304 aa23.12■■□□□ 1.29
SMARCD3-202ENST00000356800 PTCD1O75127 700 aaKnown RBP23.12■■□□□ 1.29
SMARCD3-202ENST00000356800 TMEM57Q8N5G2 664 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms