RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 PAXIP1Q6ZW49 1069 aaPredicted RBP10.06□□□□□ -0.8
ZNF540-202ENST00000343599 DEKP35659 375 aaKnown RBP10.06□□□□□ -0.8
ZNF540-202ENST00000343599 PRDM10Q9NQV6 1147 aa10.05□□□□□ -0.8
ZNF540-202ENST00000343599 PPP1R1BQ9UD71 204 aaPredicted RBP10.05□□□□□ -0.8
ZNF540-202ENST00000343599 CEMIPQ8WUJ3 1361 aa10.05□□□□□ -0.8
ZNF540-202ENST00000343599 USP47Q96K76 1375 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 RNF123Q5XPI4 1314 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 MINK1Q8N4C8 1332 aaPredicted RBP10.04□□□□□ -0.8
ZNF540-202ENST00000343599 SOGA3Q5TF21 947 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 DCAF11Q8TEB1 546 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 PKNOX2Q96KN3 472 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 HHIPL1Q96JK4 782 aa10.04□□□□□ -0.8
ZNF540-202ENST00000343599 COL11A2P13942 1736 aaPredicted RBP10.04□□□□□ -0.8
ZNF540-202ENST00000343599 FANCIQ9NVI1 1328 aa10.03□□□□□ -0.8
ZNF540-202ENST00000343599 AMOTQ4VCS5 1084 aa10.03□□□□□ -0.8
ZNF540-202ENST00000343599 TRAK1Q9UPV9 953 aa10.03□□□□□ -0.8
ZNF540-202ENST00000343599 RGS19P49795 217 aa10.03□□□□□ -0.8
ZNF540-202ENST00000343599 CDHR2Q9BYE9 1310 aa10.02□□□□□ -0.8
ZNF540-202ENST00000343599 REM2Q8IYK8 340 aaPredicted RBP10.02□□□□□ -0.81
ZNF540-202ENST00000343599 DCAF5Q96JK2 942 aa10.02□□□□□ -0.81
ZNF540-202ENST00000343599 STK26Q9P289 416 aa10.02□□□□□ -0.81
ZNF540-202ENST00000343599 HOXC9P31274 260 aa10.02□□□□□ -0.81
ZNF540-202ENST00000343599 TESK2Q96S53 571 aa10.02□□□□□ -0.81
ZNF540-202ENST00000343599 RGL3Q3MIN7 710 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 TOM1L2Q6ZVM7 507 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 IGSF1Q8N6C5 1336 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 CCDC136Q96JN2 1154 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 COL3A1P02461 1466 aaPredicted RBP10.01□□□□□ -0.81
ZNF540-202ENST00000343599 NLRP6P59044 892 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 NLGN1Q8N2Q7 840 aa10.01□□□□□ -0.81
ZNF540-202ENST00000343599 ZCRB1Q8TBF4 217 aaKnown RBP10.01□□□□□ -0.81
ZNF540-202ENST00000343599 ANKRD24Q8TF21 1146 aa10□□□□□ -0.81
ZNF540-202ENST00000343599 SPG7Q9UQ90 795 aa10□□□□□ -0.81
ZNF540-202ENST00000343599 ZNF646O15015 1829 aaPredicted RBP10□□□□□ -0.81
ZNF540-202ENST00000343599 LTBP1Q14766 1721 aa10□□□□□ -0.81
ZNF540-202ENST00000343599 TOMM70O94826 608 aa10□□□□□ -0.81
ZNF540-202ENST00000343599 PMFBP1Q8TBY8 1022 aa10□□□□□ -0.81
ZNF540-202ENST00000343599 SNED1Q8TER0 1413 aa9.99□□□□□ -0.81
ZNF540-202ENST00000343599 SLC34A2O95436 690 aa9.99□□□□□ -0.81
ZNF540-202ENST00000343599 PRELPP51888 382 aa9.99□□□□□ -0.81
ZNF540-202ENST00000343599 FHDC1Q9C0D6 1143 aaPredicted RBP9.99□□□□□ -0.81
ZNF540-202ENST00000343599 PALLDQ8WX93 1383 aa9.99□□□□□ -0.81
ZNF540-202ENST00000343599 CCDC9Q9Y3X0 531 aaKnown RBP9.99□□□□□ -0.81
ZNF540-202ENST00000343599 NOM1Q5C9Z4 860 aaKnown RBP9.98□□□□□ -0.81
ZNF540-202ENST00000343599 A0A087WZG4 1122 aa9.98□□□□□ -0.81
ZNF540-202ENST00000343599 CABLES1Q8TDN4 633 aa9.98□□□□□ -0.81
ZNF540-202ENST00000343599 CABP1Q9NZU7 370 aa9.98□□□□□ -0.81
ZNF540-202ENST00000343599 ECM29Q5VYK3 1845 aa9.98□□□□□ -0.81
ZNF540-202ENST00000343599 KDM2BQ8NHM5 1336 aa9.97□□□□□ -0.81
ZNF540-202ENST00000343599 DNAJC5GQ8N7S2 189 aa9.97□□□□□ -0.81
ZNF540-202ENST00000343599 ARAP2Q8WZ64 1704 aa9.97□□□□□ -0.81
ZNF540-202ENST00000343599 ZNF827Q17R98 1081 aa9.96□□□□□ -0.81
ZNF540-202ENST00000343599 AXIN2Q9Y2T1 843 aa9.96□□□□□ -0.81
ZNF540-202ENST00000343599 COL1A1P02452 1464 aaPredicted RBP9.96□□□□□ -0.81
ZNF540-202ENST00000343599 MYH14Q7Z406 1995 aaKnown RBP9.96□□□□□ -0.81
ZNF540-202ENST00000343599 KLRG2A4D1S0 409 aaPredicted RBP9.96□□□□□ -0.82
ZNF540-202ENST00000343599 L3MBTL3Q96JM7 780 aaPredicted RBP9.96□□□□□ -0.82
ZNF540-202ENST00000343599 BABAM1Q9NWV8 329 aa9.96□□□□□ -0.82
ZNF540-202ENST00000343599 TATP17735 454 aaPredicted RBP9.96□□□□□ -0.82
ZNF540-202ENST00000343599 TEX13AQ9BXU3 409 aaPredicted RBP9.96□□□□□ -0.82
ZNF540-202ENST00000343599 CCDC87Q9NVE4 849 aa9.96□□□□□ -0.82
ZNF540-202ENST00000343599 KIF3CO14782 793 aa9.95□□□□□ -0.82
ZNF540-202ENST00000343599 COG3Q96JB2 828 aa9.95□□□□□ -0.82
ZNF540-202ENST00000343599 RPS6KA4O75676 772 aa9.95□□□□□ -0.82
ZNF540-202ENST00000343599 HTATSF1O43719 755 aaKnown RBP9.94□□□□□ -0.82
ZNF540-202ENST00000343599 SRPK2P78362 688 aaKnown RBP9.94□□□□□ -0.82
ZNF540-202ENST00000343599 CCDC88AQ3V6T2 1871 aa9.94□□□□□ -0.82
ZNF540-202ENST00000343599 KIF7Q2M1P5 1343 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 CC2D2BQ6DHV5 1058 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 UNCXA6NJT0 531 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 KLRG1Q96E93 195 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 ERBB4Q15303 1308 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 SMC1BQ8NDV3 1235 aa9.93□□□□□ -0.82
ZNF540-202ENST00000343599 CA12O43570 354 aa9.92□□□□□ -0.82
ZNF540-202ENST00000343599 TMF1P82094 1093 aa9.92□□□□□ -0.82
ZNF540-202ENST00000343599 LRRC4BQ9NT99 713 aa9.92□□□□□ -0.82
ZNF540-202ENST00000343599 PSDA5PKW4 1024 aaPredicted RBP9.91□□□□□ -0.82
ZNF540-202ENST00000343599 XPCQ01831 940 aaPredicted RBP9.91□□□□□ -0.82
ZNF540-202ENST00000343599 STYK1Q6J9G0 422 aa9.91□□□□□ -0.82
ZNF540-202ENST00000343599 ARID3AQ99856 593 aa9.91□□□□□ -0.82
ZNF540-202ENST00000343599 CACNA1FO60840 1977 aa9.9□□□□□ -0.82
ZNF540-202ENST00000343599 SSC5DA1L4H1 1573 aa9.9□□□□□ -0.82
ZNF540-202ENST00000343599 TM4SF1P30408 202 aa9.9□□□□□ -0.82
ZNF540-202ENST00000343599 IFNL2Q8IZJ0 200 aa9.9□□□□□ -0.82
ZNF540-202ENST00000343599 PAPPA2Q9BXP8 1791 aa9.89□□□□□ -0.83
ZNF540-202ENST00000343599 ZC3H6P61129 1189 aaKnown RBP9.89□□□□□ -0.83
ZNF540-202ENST00000343599 STRN4Q9NRL3 753 aa9.89□□□□□ -0.83
ZNF540-202ENST00000343599 CCNL1Q9UK58 526 aaPredicted RBP9.89□□□□□ -0.83
ZNF540-202ENST00000343599 SOS1Q07889 1333 aaPredicted RBP9.89□□□□□ -0.83
ZNF540-202ENST00000343599 PAK3O75914 559 aaPredicted RBP9.88□□□□□ -0.83
ZNF540-202ENST00000343599 COL23A1Q86Y22 540 aaPredicted RBP9.88□□□□□ -0.83
ZNF540-202ENST00000343599 L3MBTL2Q969R5 705 aa9.88□□□□□ -0.83
ZNF540-202ENST00000343599 CFHR5Q9BXR6 569 aa9.88□□□□□ -0.83
ZNF540-202ENST00000343599 CHRNA2Q15822 529 aa9.87□□□□□ -0.83
ZNF540-202ENST00000343599 SAGE1Q9NXZ1 904 aa9.87□□□□□ -0.83
ZNF540-202ENST00000343599 PASKQ96RG2 1323 aa9.87□□□□□ -0.83
ZNF540-202ENST00000343599 TMC4Q7Z404 712 aa9.87□□□□□ -0.83
ZNF540-202ENST00000343599 USP42Q9H9J4 1324 aaKnown RBP9.87□□□□□ -0.83
ZNF540-202ENST00000343599 PHKG2P15735 406 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 CLEC4GQ6UXB4 293 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms