RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 EIF4A1P60842 406 aaKnown RBP25.26■■□□□ 1.63
RTN1-202ENST00000342503 C1orf115Q9H7X2 142 aa25.26■■□□□ 1.63
RTN1-202ENST00000342503 KCNQ3O43525 872 aa25.26■■□□□ 1.63
RTN1-202ENST00000342503 PKD1L3Q7Z443 1732 aa25.26■■□□□ 1.63
RTN1-202ENST00000342503 NECTIN2Q92692 538 aa25.26■■□□□ 1.63
RTN1-202ENST00000342503 SPG7Q9UQ90 795 aa25.25■■□□□ 1.63
RTN1-202ENST00000342503 PLEKHG2Q9H7P9 1386 aa25.24■■□□□ 1.63
RTN1-202ENST00000342503 FAM161AQ3B820 660 aa25.23■■□□□ 1.63
RTN1-202ENST00000342503 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.23■■□□□ 1.63
RTN1-202ENST00000342503 SMC5Q8IY18 1101 aa25.23■■□□□ 1.63
RTN1-202ENST00000342503 ROBO1Q9Y6N7 1651 aa25.22■■□□□ 1.63
RTN1-202ENST00000342503 PHKG2P15735 406 aa25.21■■□□□ 1.63
RTN1-202ENST00000342503 HDGFL1Q5TGJ6 251 aa25.21■■□□□ 1.63
RTN1-202ENST00000342503 COL5A2P05997 1499 aaPredicted RBP25.21■■□□□ 1.63
RTN1-202ENST00000342503 WDR17Q8IZU2 1322 aa25.21■■□□□ 1.63
RTN1-202ENST00000342503 HOXB7P09629 217 aa25.2■■□□□ 1.63
RTN1-202ENST00000342503 FLIIQ13045 1269 aa25.2■■□□□ 1.63
RTN1-202ENST00000342503 C8orf34Q49A92 452 aa25.2■■□□□ 1.63
RTN1-202ENST00000342503 LTBP4Q8N2S1 1624 aa25.2■■□□□ 1.63
RTN1-202ENST00000342503 KDM6AO15550 1401 aaPredicted RBP25.2■■□□□ 1.62
RTN1-202ENST00000342503 PARP4Q9UKK3 1724 aaKnown RBP25.2■■□□□ 1.62
RTN1-202ENST00000342503 F6X3S4 739 aa25.19■■□□□ 1.62
RTN1-202ENST00000342503 IFNL2Q8IZJ0 200 aa25.18■■□□□ 1.62
RTN1-202ENST00000342503 N4BP2Q86UW6 1770 aaPredicted RBP25.18■■□□□ 1.62
RTN1-202ENST00000342503 SIRT2Q8IXJ6 389 aa25.17■■□□□ 1.62
RTN1-202ENST00000342503 EIF2S2P20042 333 aaKnown RBP25.17■■□□□ 1.62
RTN1-202ENST00000342503 CCT4P50991 539 aaKnown RBP25.17■■□□□ 1.62
RTN1-202ENST00000342503 FKBP5Q13451 457 aaPredicted RBP25.17■■□□□ 1.62
RTN1-202ENST00000342503 SLC4A10Q6U841 1118 aa25.17■■□□□ 1.62
RTN1-202ENST00000342503 TOM1L2Q6ZVM7 507 aa25.17■■□□□ 1.62
RTN1-202ENST00000342503 AHDC1Q5TGY3 1603 aaPredicted RBP25.15■■□□□ 1.62
RTN1-202ENST00000342503 CYP27B1O15528 508 aa25.15■■□□□ 1.62
RTN1-202ENST00000342503 HEG1Q9ULI3 1381 aa25.14■■□□□ 1.61
RTN1-202ENST00000342503 MEIS3Q99687 375 aa25.14■■□□□ 1.61
RTN1-202ENST00000342503 CHMP4AQ9BY43 222 aa25.14■■□□□ 1.61
RTN1-202ENST00000342503 SLC52A2Q9HAB3 445 aa25.14■■□□□ 1.61
RTN1-202ENST00000342503 ANP32AP39687 249 aaKnown RBP25.13■■□□□ 1.61
RTN1-202ENST00000342503 NUCB1Q02818 461 aa25.13■■□□□ 1.61
RTN1-202ENST00000342503 GCC1Q96CN9 775 aa25.13■■□□□ 1.61
RTN1-202ENST00000342503 PHAXQ9H814 394 aaKnown RBP25.13■■□□□ 1.61
RTN1-202ENST00000342503 ATP10DQ9P241 1426 aa25.12■■□□□ 1.61
RTN1-202ENST00000342503 NPM2Q86SE8 214 aaKnown RBP25.12■■□□□ 1.61
RTN1-202ENST00000342503 CHPF2Q9P2E5 772 aa25.12■■□□□ 1.61
RTN1-202ENST00000342503 MRC1P22897 1456 aa25.12■■□□□ 1.61
RTN1-202ENST00000342503 PXDNLA1KZ92 1463 aa25.11■■□□□ 1.61
RTN1-202ENST00000342503 MSH5O43196 834 aa25.11■■□□□ 1.61
RTN1-202ENST00000342503 GIGYF1O75420 1035 aaPredicted RBP25.11■■□□□ 1.61
RTN1-202ENST00000342503 DCAF5Q96JK2 942 aa25.11■■□□□ 1.61
RTN1-202ENST00000342503 CARD10Q9BWT7 1032 aa25.11■■□□□ 1.61
RTN1-202ENST00000342503 STRN4Q9NRL3 753 aa25.11■■□□□ 1.61
RTN1-202ENST00000342503 ANKRD44Q8N8A2 993 aa25.1■■□□□ 1.61
RTN1-202ENST00000342503 COL22A1Q8NFW1 1626 aaPredicted RBP25.09■■□□□ 1.61
RTN1-202ENST00000342503 HSP90AB1P08238 724 aaKnown RBP25.09■■□□□ 1.61
RTN1-202ENST00000342503 EVA1CP58658 441 aa25.09■■□□□ 1.61
RTN1-202ENST00000342503 LARP1Q6PKG0 1096 aaKnown RBP25.09■■□□□ 1.61
RTN1-202ENST00000342503 NFATC2IPQ8NCF5 419 aa25.09■■□□□ 1.61
RTN1-202ENST00000342503 CHD1LQ86WJ1 897 aa25.09■■□□□ 1.61
RTN1-202ENST00000342503 RPAP2Q8IXW5 612 aaPredicted RBP25.09■■□□□ 1.61
RTN1-202ENST00000342503 C5P01031 1676 aa25.08■■□□□ 1.61
RTN1-202ENST00000342503 SLC39A6Q13433 755 aa25.08■■□□□ 1.61
RTN1-202ENST00000342503 CEP85Q6P2H3 762 aa25.08■■□□□ 1.61
RTN1-202ENST00000342503 PRAMEF22A3QJZ6 481 aa25.07■■□□□ 1.6
RTN1-202ENST00000342503 ZNF790Q6PG37 636 aa25.07■■□□□ 1.6
RTN1-202ENST00000342503 ZCRB1Q8TBF4 217 aaKnown RBP25.07■■□□□ 1.6
RTN1-202ENST00000342503 SHANK3Q9BYB0 1731 aa25.07■■□□□ 1.6
RTN1-202ENST00000342503 COL14A1Q05707 1796 aaKnown RBP25.07■■□□□ 1.6
RTN1-202ENST00000342503 ANKRD45Q5TZF3 282 aa25.06■■□□□ 1.6
RTN1-202ENST00000342503 LNPKQ9C0E8 428 aa25.06■■□□□ 1.6
RTN1-202ENST00000342503 IL2RBP14784 551 aa25.06■■□□□ 1.6
RTN1-202ENST00000342503 PCDH11XQ9BZA7 1347 aa25.05■■□□□ 1.6
RTN1-202ENST00000342503 PCDH11YQ9BZA8 1340 aa25.05■■□□□ 1.6
RTN1-202ENST00000342503 ANXA1P04083 346 aa25.05■■□□□ 1.6
RTN1-202ENST00000342503 DBF4Q9UBU7 674 aaPredicted RBP25.05■■□□□ 1.6
RTN1-202ENST00000342503 DCTPP1Q9H773 170 aa25.04■■□□□ 1.6
RTN1-202ENST00000342503 COL16A1Q07092 1604 aaPredicted RBP25.03■■□□□ 1.6
RTN1-202ENST00000342503 PHLPP1O60346 1717 aa25.03■■□□□ 1.6
RTN1-202ENST00000342503 GNAI2P04899 355 aa25.02■■□□□ 1.6
RTN1-202ENST00000342503 CABP4P57796 275 aa25.02■■□□□ 1.6
RTN1-202ENST00000342503 IPO9Q96P70 1041 aaKnown RBP25.02■■□□□ 1.6
RTN1-202ENST00000342503 BTG4Q9NY30 223 aa25.02■■□□□ 1.6
RTN1-202ENST00000342503 GNAI3P08754 354 aa25.01■■□□□ 1.59
RTN1-202ENST00000342503 PROSER3Q2NL68 480 aa25■■□□□ 1.59
RTN1-202ENST00000342503 PI4KAP2A4QPH2 592 aa24.99■■□□□ 1.59
RTN1-202ENST00000342503 TTC5Q8N0Z6 440 aa24.99■■□□□ 1.59
RTN1-202ENST00000342503 PI4KAP1Q8N8J0 262 aa24.99■■□□□ 1.59
RTN1-202ENST00000342503 DNAAF4Q8WXU2 420 aa24.99■■□□□ 1.59
RTN1-202ENST00000342503 ADCY9O60503 1353 aa24.99■■□□□ 1.59
RTN1-202ENST00000342503 ZNF496Q96IT1 587 aaPredicted RBP24.98■■□□□ 1.59
RTN1-202ENST00000342503 SRCIN1Q9C0H9 1055 aa24.98■■□□□ 1.59
RTN1-202ENST00000342503 NKX1-1Q15270 411 aaPredicted RBP24.98■■□□□ 1.59
RTN1-202ENST00000342503 USP44Q9H0E7 712 aa24.98■■□□□ 1.59
RTN1-202ENST00000342503 HYPKQ9NX55 129 aa24.98■■□□□ 1.59
RTN1-202ENST00000342503 DDX21Q9NR30 783 aaKnown RBP eCLIP24.97■■□□□ 1.59
RTN1-202ENST00000342503 HMMRO75330 724 aa24.96■■□□□ 1.59
RTN1-202ENST00000342503 SEC24BO95487 1268 aa24.96■■□□□ 1.59
RTN1-202ENST00000342503 PDIA6Q15084 440 aa24.96■■□□□ 1.59
RTN1-202ENST00000342503 BEND3Q5T5X7 828 aa24.96■■□□□ 1.59
RTN1-202ENST00000342503 DDX54Q8TDD1 881 aaKnown RBP24.96■■□□□ 1.59
RTN1-202ENST00000342503 USP35Q9P2H5 1018 aa24.96■■□□□ 1.59
RTN1-202ENST00000342503 FMNL2Q96PY5 1086 aa24.95■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms