RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 RAB3IL1Q8TBN0 382 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 SRCIN1Q9C0H9 1055 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 MYOM3Q5VTT5 1437 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 WDR97A6NE52 1622 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 FBF1Q8TES7 1133 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 FGFR1OPO95684 399 aaKnown RBP12.06□□□□□ -0.48
CLIP1-201ENST00000302528 WDR70Q9NW82 654 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CASKIN1Q8WXD9 1431 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 NCAPD3P42695 1498 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 EXOSC9Q06265 439 aaKnown RBP12.06□□□□□ -0.48
CLIP1-201ENST00000302528 TTC16Q8NEE8 873 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CABP2Q9NPB3 220 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CNTLNQ9NXG0 1405 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 KIF18AQ8NI77 898 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 SMARCC1Q92922 1105 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CCDC7Q96M83 1385 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 FERMT1Q9BQL6 677 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 ZNF287Q9HBT7 754 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CEP126Q9P2H0 1117 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 AIDAQ96BJ3 306 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 NAA15Q9BXJ9 866 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 CAMK4Q16566 473 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 SPINK5Q9NQ38 1064 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 CUX1P39880 1505 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 POLR3GO15318 223 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 IDH1O75874 414 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 MYL6BP14649 208 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 CRACR2BQ8N4Y2 399 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 TIAM1Q13009 1591 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 RRP9O43818 475 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 TOP1P11387 765 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 LIG1P18858 919 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 PRKAR2BP31323 418 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 DAAM2Q86T65 1068 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 DDX54Q8TDD1 881 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 WDR78Q5VTH9 848 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 CWC27Q6UX04 472 aaKnown RBP12.05□□□□□ -0.48
CLIP1-201ENST00000302528 CCDC83Q8IWF9 413 aa12.05□□□□□ -0.48
CLIP1-201ENST00000302528 TCP11L2Q8N4U5 519 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 NOB1Q9ULX3 412 aaKnown RBP12.04□□□□□ -0.48
CLIP1-201ENST00000302528 ESCO1Q5FWF5 840 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 TIGD1Q96MW7 591 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 NUP88Q99567 741 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-201ENST00000302528 IKBKGQ9Y6K9 419 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 KIF20AO95235 890 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 MRPS9P82933 396 aaKnown RBP12.04□□□□□ -0.48
CLIP1-201ENST00000302528 CBX1P83916 185 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 RAB34Q9BZG1 259 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 ESPNB1AK53 854 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 ARL1P40616 181 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-201ENST00000302528 CETN1Q12798 172 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 CALCOCO1Q9P1Z2 691 aa12.04□□□□□ -0.48
CLIP1-201ENST00000302528 ACTN2P35609 894 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 IGHMBP2P38935 993 aaKnown RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 LMAN1P49257 510 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 MTHFSP49914 203 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 PRPF4BQ13523 1007 aaKnown RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 TRERF1Q96PN7 1200 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 YEATS4O95619 227 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 PDIA4P13667 645 aaKnown RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 CCDC96Q2M329 555 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 ALS2CR12Q96Q35 445 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 POLR3DP05423 398 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 MAATS1Q7Z4T9 603 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 IL27Q8NEV9 243 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 PNISRQ8TF01 805 aaKnown RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 ABCF2Q9UG63 623 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 FYCO1Q9BQS8 1478 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 CUL5Q93034 780 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 ANO10Q9NW15 660 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 CTR9Q6PD62 1173 aa12.03□□□□□ -0.48
CLIP1-201ENST00000302528 SREK1Q8WXA9 508 aaKnown RBP12.03□□□□□ -0.48
CLIP1-201ENST00000302528 BICDL1Q6ZP65 573 aa12.02□□□□□ -0.49
CLIP1-201ENST00000302528 TOM1L2Q6ZVM7 507 aa12.02□□□□□ -0.49
CLIP1-201ENST00000302528 MKNK2Q9HBH9 465 aa12.02□□□□□ -0.49
CLIP1-201ENST00000302528 PRDM10Q9NQV6 1147 aa12.02□□□□□ -0.49
CLIP1-201ENST00000302528 APBB1IPQ7Z5R6 666 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-201ENST00000302528 MXRA7P84157 204 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CEP112Q8N8E3 955 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CPLX3Q8WVH0 158 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 PHAXQ9H814 394 aaKnown RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 SRGAP3O43295 1099 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 SPTY2D1Q68D10 685 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 PAXIP1Q6ZW49 1069 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 TMX1Q9H3N1 280 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CFTRP13569 1480 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 SYCE3A1L190 88 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 BBXQ8WY36 941 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CGNQ9P2M7 1197 aaKnown RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC160A6NGH7 325 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 NUTM2BA6NNL0 878 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 NUTM2EB1AL46 878 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 POTEB2H3BUK9 544 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 GTF2F1P35269 517 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 NUTM2AQ8IVF1 878 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 RAD54L2Q9Y4B4 1467 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC6Q16204 474 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 ADAMTS8Q9UP79 889 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms