RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 SMIM5Q71RC9 77 aa16.63■□□□□ 0.25
TRAF4-202ENST00000262396 TUBGCP6Q96RT7 1819 aa16.63■□□□□ 0.25
TRAF4-202ENST00000262396 TRAPPC3LQ5T215 181 aa16.62■□□□□ 0.25
TRAF4-202ENST00000262396 WWC3Q9ULE0 1092 aa16.62■□□□□ 0.25
TRAF4-202ENST00000262396 C4BP0C0L5 1744 aa16.62■□□□□ 0.25
TRAF4-202ENST00000262396 GIGYF1O75420 1035 aaPredicted RBP16.61■□□□□ 0.25
TRAF4-202ENST00000262396 ITPK1Q13572 414 aa16.61■□□□□ 0.25
TRAF4-202ENST00000262396 ANKRD26Q9UPS8 1709 aa16.61■□□□□ 0.25
TRAF4-202ENST00000262396 TOGARAM1Q9Y4F4 1720 aa16.6■□□□□ 0.25
TRAF4-202ENST00000262396 ITGB4P16144 1822 aa16.6■□□□□ 0.25
TRAF4-202ENST00000262396 PLEKHG2Q9H7P9 1386 aa16.6■□□□□ 0.25
TRAF4-202ENST00000262396 SENP3-EIF4A1A0A087X0R7 540 aa16.59■□□□□ 0.25
TRAF4-202ENST00000262396 PTCD1O75127 700 aaKnown RBP16.59■□□□□ 0.25
TRAF4-202ENST00000262396 YBX3P16989 372 aaKnown RBP eCLIP16.59■□□□□ 0.252e-7■■□□□ 13.8
TRAF4-202ENST00000262396 RFC4P35249 363 aa16.59■□□□□ 0.25
TRAF4-202ENST00000262396 AEBP1Q8IUX7 1158 aa16.59■□□□□ 0.25
TRAF4-202ENST00000262396 CHD4Q14839 1912 aa16.58■□□□□ 0.24
TRAF4-202ENST00000262396 MMP10P09238 476 aa16.57■□□□□ 0.24
TRAF4-202ENST00000262396 CC2D1BQ5T0F9 858 aaKnown RBP16.57■□□□□ 0.24
TRAF4-202ENST00000262396 AMIGO3Q86WK7 504 aa16.57■□□□□ 0.24
TRAF4-202ENST00000262396 NLGN1Q8N2Q7 840 aa16.57■□□□□ 0.24
TRAF4-202ENST00000262396 KIF7Q2M1P5 1343 aa16.56■□□□□ 0.24
TRAF4-202ENST00000262396 C1QTNF8P60827 252 aa16.56■□□□□ 0.24
TRAF4-202ENST00000262396 NFATC2IPQ8NCF5 419 aa16.56■□□□□ 0.24
TRAF4-202ENST00000262396 UTRNP46939 3433 aa16.55■□□□□ 0.24
TRAF4-202ENST00000262396 TAF1LQ8IZX4 1826 aa16.55■□□□□ 0.24
TRAF4-202ENST00000262396 HMOX1P09601 288 aa16.55■□□□□ 0.24
TRAF4-202ENST00000262396 ADRA2BP18089 450 aa16.55■□□□□ 0.24
TRAF4-202ENST00000262396 PARP3Q9Y6F1 533 aa16.55■□□□□ 0.24
TRAF4-202ENST00000262396 IL13P35225 146 aa16.54■□□□□ 0.24
TRAF4-202ENST00000262396 AKAP4Q5JQC9 854 aa16.54■□□□□ 0.24
TRAF4-202ENST00000262396 RC3H1Q5TC82 1133 aaKnown RBP16.54■□□□□ 0.24
TRAF4-202ENST00000262396 ARHGEF1Q92888 912 aaKnown RBP16.54■□□□□ 0.24
TRAF4-202ENST00000262396 CCDC87Q9NVE4 849 aa16.54■□□□□ 0.24
TRAF4-202ENST00000262396 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
TRAF4-202ENST00000262396 RPS6KA4O75676 772 aa16.53■□□□□ 0.24
TRAF4-202ENST00000262396 AMER1Q5JTC6 1135 aaPredicted RBP16.53■□□□□ 0.24
TRAF4-202ENST00000262396 ZNF526Q8TF50 670 aaPredicted RBP16.53■□□□□ 0.24
TRAF4-202ENST00000262396 GPBP1L1Q9HC44 474 aaPredicted RBP16.53■□□□□ 0.24
TRAF4-202ENST00000262396 COL24A1Q17RW2 1714 aa16.53■□□□□ 0.24
TRAF4-202ENST00000262396 CNTNAP4Q9C0A0 1308 aa16.52■□□□□ 0.24
TRAF4-202ENST00000262396 U2SURPO15042 1029 aaKnown RBP16.52■□□□□ 0.24
TRAF4-202ENST00000262396 BCS1LQ9Y276 419 aa16.51■□□□□ 0.23
TRAF4-202ENST00000262396 KDM6AO15550 1401 aaPredicted RBP16.51■□□□□ 0.23
TRAF4-202ENST00000262396 CRKLP46109 303 aaKnown RBP16.5■□□□□ 0.23
TRAF4-202ENST00000262396 SLC4A9Q96Q91 983 aa16.5■□□□□ 0.23
TRAF4-202ENST00000262396 UBR3Q6ZT12 1888 aa16.5■□□□□ 0.23
TRAF4-202ENST00000262396 KDRP35968 1356 aa16.5■□□□□ 0.23
TRAF4-202ENST00000262396 ZPR1O75312 459 aa16.49■□□□□ 0.23
TRAF4-202ENST00000262396 TGFB2P61812 414 aa16.49■□□□□ 0.23
TRAF4-202ENST00000262396 SLC52A2Q9HAB3 445 aa16.49■□□□□ 0.23
TRAF4-202ENST00000262396 ATP10DQ9P241 1426 aa16.48■□□□□ 0.23
TRAF4-202ENST00000262396 GYS1P13807 737 aa16.48■□□□□ 0.23
TRAF4-202ENST00000262396 TTC5Q8N0Z6 440 aa16.48■□□□□ 0.23
TRAF4-202ENST00000262396 A0A0G2JLW4 131 aa16.47■□□□□ 0.23
TRAF4-202ENST00000262396 RNMTO43148 476 aaKnown RBP16.47■□□□□ 0.23
TRAF4-202ENST00000262396 FCHSD2O94868 740 aa16.47■□□□□ 0.23
TRAF4-202ENST00000262396 CFAP53Q96M91 514 aa16.47■□□□□ 0.23
TRAF4-202ENST00000262396 LGR6Q9HBX8 967 aa16.47■□□□□ 0.23
TRAF4-202ENST00000262396 ARHGAP27Q6ZUM4 889 aa16.46■□□□□ 0.23
TRAF4-202ENST00000262396 NPM2Q86SE8 214 aaKnown RBP16.46■□□□□ 0.23
TRAF4-202ENST00000262396 TEFQ10587 303 aa16.45■□□□□ 0.22
TRAF4-202ENST00000262396 SLC39A6Q13433 755 aa16.45■□□□□ 0.22
TRAF4-202ENST00000262396 MTHFSDQ2M296 383 aaKnown RBP16.45■□□□□ 0.22
TRAF4-202ENST00000262396 DNAJC10Q8IXB1 793 aa16.45■□□□□ 0.22
TRAF4-202ENST00000262396 SRP68Q9UHB9 627 aaKnown RBP16.45■□□□□ 0.22
TRAF4-202ENST00000262396 CICQ96RK0 1608 aaPredicted RBP16.44■□□□□ 0.22
TRAF4-202ENST00000262396 GOLGB1Q14789 3259 aaKnown RBP16.43■□□□□ 0.22
TRAF4-202ENST00000262396 DPEP1P16444 411 aa16.43■□□□□ 0.22
TRAF4-202ENST00000262396 GAS2L2Q8NHY3 880 aa16.43■□□□□ 0.22
TRAF4-202ENST00000262396 NUDCQ9Y266 331 aa16.43■□□□□ 0.22
TRAF4-202ENST00000262396 USP42Q9H9J4 1324 aaKnown RBP16.43■□□□□ 0.22
TRAF4-202ENST00000262396 PER1O15534 1290 aaPredicted RBP16.42■□□□□ 0.22
TRAF4-202ENST00000262396 STARD3NLO95772 234 aa16.42■□□□□ 0.22
TRAF4-202ENST00000262396 FKBP8Q14318 412 aa16.42■□□□□ 0.22
TRAF4-202ENST00000262396 USPL1Q5W0Q7 1092 aa16.42■□□□□ 0.22
TRAF4-202ENST00000262396 PIM2Q9P1W9 311 aa16.42■□□□□ 0.22
TRAF4-202ENST00000262396 ZNF330Q9Y3S2 320 aaPredicted RBP16.42■□□□□ 0.22
TRAF4-202ENST00000262396 GNAT3A8MTJ3 354 aa16.41■□□□□ 0.22
TRAF4-202ENST00000262396 CANXP27824 592 aaKnown RBP16.41■□□□□ 0.22
TRAF4-202ENST00000262396 DALRD3Q5D0E6 543 aaKnown RBP16.4■□□□□ 0.22
TRAF4-202ENST00000262396 INTS5Q6P9B9 1019 aaKnown RBP16.4■□□□□ 0.22
TRAF4-202ENST00000262396 PXDNLA1KZ92 1463 aa16.4■□□□□ 0.22
TRAF4-202ENST00000262396 C10orf71Q711Q0 1435 aa16.39■□□□□ 0.21
TRAF4-202ENST00000262396 NPHP1O15259 732 aa16.39■□□□□ 0.21
TRAF4-202ENST00000262396 CYP19A1P11511 503 aaPredicted RBP16.39■□□□□ 0.21
TRAF4-202ENST00000262396 ZNF831Q5JPB2 1677 aa16.39■□□□□ 0.21
TRAF4-202ENST00000262396 A0A087WZG4 1122 aa16.38■□□□□ 0.21
TRAF4-202ENST00000262396 NEFMP07197 916 aa16.38■□□□□ 0.21
TRAF4-202ENST00000262396 VSIG10Q8N0Z9 540 aa16.38■□□□□ 0.21
TRAF4-202ENST00000262396 RTF1Q92541 710 aaKnown RBP16.38■□□□□ 0.21
TRAF4-202ENST00000262396 BICDL1Q6ZP65 573 aa16.37■□□□□ 0.21
TRAF4-202ENST00000262396 C16orf71Q8IYS4 520 aaPredicted RBP16.37■□□□□ 0.21
TRAF4-202ENST00000262396 TEX13AQ9BXU3 409 aaPredicted RBP16.37■□□□□ 0.21
TRAF4-202ENST00000262396 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
TRAF4-202ENST00000262396 SOS1Q07889 1333 aaPredicted RBP16.37■□□□□ 0.21
TRAF4-202ENST00000262396 COL15A1P39059 1388 aa16.37■□□□□ 0.21
TRAF4-202ENST00000262396 NPC1L1Q9UHC9 1359 aa16.37■□□□□ 0.21
TRAF4-202ENST00000262396 C4AP0C0L4 1744 aa16.36■□□□□ 0.21
TRAF4-202ENST00000262396 COL5A3P25940 1745 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms