Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 CA15P1-201ENST00000481698 905 ntBASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 SLC25A1P4-201ENST00000567977 778 ntBASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS9D1Q9Y2B5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 MFAP1P1-201ENST00000442257 1255 ntBASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 AC097488.1-201ENST00000507834 756 ntBASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 AC026471.5-201ENST00000615068 467 ntBASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS9D1Q9Y2B5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 AC008550.1-201ENST00000511500 884 ntBASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 REXO1L10P-201ENST00000615707 1290 ntBASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 REXO1L12P-201ENST00000622156 912 ntBASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS9D1Q9Y2B5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS9D1Q9Y2B5 WIZP1-201ENST00000531444 2299 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms