Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL17A1Q9UMD9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC28.43■■■□□ 2.14
COL17A1Q9UMD9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL17A1Q9UMD9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL17A1Q9UMD9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 HOXB1-202ENST00000577092 1414 ntBASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
COL17A1Q9UMD9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 PAN3-AS1-201ENST00000563843 1351 ntBASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC28.41■■■□□ 2.14
COL17A1Q9UMD9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 HLA-J-203ENST00000494367 1087 ntBASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 RNA5SP415-201ENST00000517246 115 ntBASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 AC021087.4-201ENST00000563761 564 ntBASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
COL17A1Q9UMD9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC28.39■■■□□ 2.14
COL17A1Q9UMD9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 RBM17P3-201ENST00000417687 1192 ntBASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 LHX6-205ENST00000464484 666 ntTSL 2 BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
COL17A1Q9UMD9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 AL353692.3-201ENST00000407031 1396 ntBASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 CCS-201ENST00000310190 942 ntTSL 5 BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC28.38■■■□□ 2.13
COL17A1Q9UMD9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC28.37■■■□□ 2.13
COL17A1Q9UMD9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC28.36■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms