Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MYC-208ENST00000641036 567 ntBASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMA1Q9UHB6 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 AC110285.5-201ENST00000611501 352 ntBASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIMA1Q9UHB6 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 RN7SL471P-201ENST00000580476 299 ntBASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 AL353708.3-201ENST00000610272 989 ntBASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.53■□□□□ 0.88
LIMA1Q9UHB6 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 RPS2P4-201ENST00000476944 856 ntBASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
LIMA1Q9UHB6 AC008764.6-201ENST00000595909 2069 ntBASIC20.52■□□□□ 0.87
LIMA1Q9UHB6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
LIMA1Q9UHB6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIMA1Q9UHB6 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
LIMA1Q9UHB6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 AC135776.1-201ENST00000319817 2481 ntBASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMA1Q9UHB6 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms