Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LHX3Q9UBR4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LHX3Q9UBR4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 AK4P3-201ENST00000418260 669 ntBASIC18.92■□□□□ 0.62
LHX3Q9UBR4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LHX3Q9UBR4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 BX323043.1-201ENST00000641006 1765 ntBASIC18.91■□□□□ 0.62
LHX3Q9UBR4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 AP000523.1-201ENST00000398242 1049 ntBASIC18.91■□□□□ 0.62
LHX3Q9UBR4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 AC018445.3-201ENST00000624177 1945 ntBASIC18.91■□□□□ 0.62
LHX3Q9UBR4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
LHX3Q9UBR4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 AC093525.10-201ENST00000625130 1569 ntBASIC18.9■□□□□ 0.62
LHX3Q9UBR4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 GCSHP2-201ENST00000560971 527 ntBASIC18.9■□□□□ 0.62
LHX3Q9UBR4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX3Q9UBR4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LHX3Q9UBR4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.89■□□□□ 0.62
LHX3Q9UBR4 AC034236.2-201ENST00000606662 1610 ntBASIC18.89■□□□□ 0.62
LHX3Q9UBR4 AC098818.2-201ENST00000564925 2320 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 RNF152P1-201ENST00000397754 604 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 KRT18P23-201ENST00000435622 1283 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 SEC1P-202ENST00000473944 940 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AC140113.3-201ENST00000605663 199 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AC024243.1-201ENST00000609234 778 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AC112497.1-201ENST00000624824 639 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AL031432.5-201ENST00000641059 760 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 HOXB1-202ENST00000577092 1414 ntBASIC18.89■□□□□ 0.61
LHX3Q9UBR4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms