Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 KRT8P45-201ENST00000414328 1447 ntBASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 RN7SL850P-201ENST00000579959 291 ntBASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM39Q9HCM9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 KRT8P32-201ENST00000512863 1461 ntBASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 TMPOP1-202ENST00000424642 1267 ntBASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 BX664615.1-201ENST00000443558 458 ntBASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 KRT18P57-201ENST00000443599 1254 ntBASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 MCCD1P1-208ENST00000445732 328 ntBASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM39Q9HCM9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM39Q9HCM9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 WWOX-216ENST00000569818 525 ntBASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 AC141257.4-201ENST00000634557 245 ntBASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 AC136944.6-201ENST00000634818 245 ntBASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 RCC2P3-201ENST00000418112 1537 ntBASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.58■□□□□ 0.56
TRIM39Q9HCM9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms