Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC23.85■■□□□ 1.41
USP42Q9H9J4 TOB2P1-201ENST00000469761 992 ntBASIC23.85■■□□□ 1.41
USP42Q9H9J4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC23.85■■□□□ 1.41
USP42Q9H9J4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC23.85■■□□□ 1.41
USP42Q9H9J4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 KRT8P3-201ENST00000519669 1449 ntBASIC23.85■■□□□ 1.41
USP42Q9H9J4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.85■■□□□ 1.41
USP42Q9H9J4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USP42Q9H9J4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
USP42Q9H9J4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 KRT18P31-201ENST00000506277 1292 ntBASIC23.84■■□□□ 1.41
USP42Q9H9J4 FOSL1P1-201ENST00000511041 816 ntBASIC23.84■■□□□ 1.41
USP42Q9H9J4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 AC106795.1-205ENST00000512851 1056 ntBASIC23.84■■□□□ 1.41
USP42Q9H9J4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 SLC25A6P4-201ENST00000586535 553 ntBASIC23.84■■□□□ 1.41
USP42Q9H9J4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP42Q9H9J4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC23.84■■□□□ 1.41
USP42Q9H9J4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
USP42Q9H9J4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
USP42Q9H9J4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
USP42Q9H9J4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.83■■□□□ 1.41
USP42Q9H9J4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.83■■□□□ 1.41
USP42Q9H9J4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP42Q9H9J4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.83■■□□□ 1.4
USP42Q9H9J4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP42Q9H9J4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP42Q9H9J4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC23.83■■□□□ 1.4
USP42Q9H9J4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
USP42Q9H9J4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP42Q9H9J4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC23.83■■□□□ 1.4
USP42Q9H9J4 AP002469.2-201ENST00000531724 424 ntBASIC23.83■■□□□ 1.4
USP42Q9H9J4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP42Q9H9J4 GPALPP1-207ENST00000611650 899 ntBASIC23.83■■□□□ 1.4
USP42Q9H9J4 AC006538.3-201ENST00000612495 578 ntBASIC23.83■■□□□ 1.4
USP42Q9H9J4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.83■■□□□ 1.4
USP42Q9H9J4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP42Q9H9J4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
USP42Q9H9J4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 AC093484.2-201ENST00000580996 2166 ntBASIC23.81■■□□□ 1.4
USP42Q9H9J4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
USP42Q9H9J4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP42Q9H9J4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms