Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.35■□□□□ 0.85
CDT1Q9H211 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CDT1Q9H211 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDT1Q9H211 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.34■□□□□ 0.85
CDT1Q9H211 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.34■□□□□ 0.85
CDT1Q9H211 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.34■□□□□ 0.85
CDT1Q9H211 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.34■□□□□ 0.85
CDT1Q9H211 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 AC087388.1-201ENST00000571370 1112 ntBASIC20.34■□□□□ 0.85
CDT1Q9H211 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.34■□□□□ 0.85
CDT1Q9H211 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDT1Q9H211 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.33■□□□□ 0.85
CDT1Q9H211 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 STARP1-201ENST00000397973 869 ntBASIC20.33■□□□□ 0.85
CDT1Q9H211 KRT18P23-201ENST00000435622 1283 ntBASIC20.33■□□□□ 0.85
CDT1Q9H211 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.33■□□□□ 0.85
CDT1Q9H211 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.33■□□□□ 0.85
CDT1Q9H211 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CDT1Q9H211 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDT1Q9H211 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.33■□□□□ 0.85
CDT1Q9H211 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDT1Q9H211 HOXB1-202ENST00000577092 1414 ntBASIC20.33■□□□□ 0.84
CDT1Q9H211 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.33■□□□□ 0.84
CDT1Q9H211 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDT1Q9H211 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDT1Q9H211 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
CDT1Q9H211 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 AL357033.4-201ENST00000617703 1807 ntBASIC20.32■□□□□ 0.84
CDT1Q9H211 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.32■□□□□ 0.84
CDT1Q9H211 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.32■□□□□ 0.84
CDT1Q9H211 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 AL031133.1-201ENST00000406807 723 ntBASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.32■□□□□ 0.84
CDT1Q9H211 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.32■□□□□ 0.84
CDT1Q9H211 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDT1Q9H211 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.32■□□□□ 0.84
CDT1Q9H211 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDT1Q9H211 Z98044.1-201ENST00000632503 1764 ntBASIC20.31■□□□□ 0.84
CDT1Q9H211 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.31■□□□□ 0.84
CDT1Q9H211 AC034236.2-201ENST00000606662 1610 ntBASIC20.31■□□□□ 0.84
CDT1Q9H211 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDT1Q9H211 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms