Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TRAIPQ9BWF2 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAIPQ9BWF2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAIPQ9BWF2 AP000974.1-201ENST00000623909 2387 ntBASIC20.56■□□□□ 0.88
TRAIPQ9BWF2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAIPQ9BWF2 AC005332.1-201ENST00000577698 1310 ntBASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 IER3-202ENST00000376377 1350 ntBASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRAIPQ9BWF2 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 AC112907.2-201ENST00000448639 330 ntBASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 AC083849.1-201ENST00000615227 514 ntBASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAIPQ9BWF2 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 ZNF444P1-201ENST00000559497 298 ntBASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAIPQ9BWF2 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 TEX21P-204ENST00000641479 1693 ntBASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 SPDYE15P-201ENST00000424157 909 ntBASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 MIR3180-5-201ENST00000583743 153 ntBASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms