Protein–RNA interactions for Protein: Q96JH7

VCPIP1, Deubiquitinating protein VCIP135, humanhuman

Predictions only

Length 1,222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPIP1Q96JH7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 KRT18P41-201ENST00000518924 1277 ntBASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 MIR4497-201ENST00000583208 89 ntBASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 AC026471.5-201ENST00000615068 467 ntBASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 AC073912.3-201ENST00000624414 853 ntBASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPIP1Q96JH7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 ECEL1P3-201ENST00000427961 737 ntBASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 AC008622.2-201ENST00000617006 1229 ntBASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.78■□□□□ 0.76
VCPIP1Q96JH7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 AP005242.2-201ENST00000580065 1175 ntBASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 NEFHP1-201ENST00000412845 2629 ntBASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPIP1Q96JH7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VCPIP1Q96JH7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VCPIP1Q96JH7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 AC135050.7-201ENST00000624508 2218 ntBASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 BICD1-207ENST00000551848 1962 ntBASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCPIP1Q96JH7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms