Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
RTF1Q92541 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
RTF1Q92541 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
RTF1Q92541 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC24.5■■□□□ 1.51
RTF1Q92541 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.5■■□□□ 1.51
RTF1Q92541 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC24.5■■□□□ 1.51
RTF1Q92541 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC24.5■■□□□ 1.51
RTF1Q92541 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC24.49■■□□□ 1.51
RTF1Q92541 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
RTF1Q92541 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.49■■□□□ 1.51
RTF1Q92541 KRT18P23-201ENST00000435622 1283 ntBASIC24.49■■□□□ 1.51
RTF1Q92541 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC24.49■■□□□ 1.51
RTF1Q92541 AC083849.1-201ENST00000615227 514 ntBASIC24.49■■□□□ 1.51
RTF1Q92541 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC24.49■■□□□ 1.51
RTF1Q92541 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RTF1Q92541 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.48■■□□□ 1.51
RTF1Q92541 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC24.48■■□□□ 1.51
RTF1Q92541 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 IER3-202ENST00000376377 1350 ntBASIC24.48■■□□□ 1.51
RTF1Q92541 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 ELP6-205ENST00000439305 880 ntTSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC24.48■■□□□ 1.51
RTF1Q92541 VENTXP5-201ENST00000523979 775 ntBASIC24.48■■□□□ 1.51
RTF1Q92541 KRT8P7-201ENST00000533003 1432 ntBASIC24.48■■□□□ 1.51
RTF1Q92541 AC005332.1-201ENST00000577698 1310 ntBASIC24.48■■□□□ 1.51
RTF1Q92541 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.48■■□□□ 1.51
RTF1Q92541 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC24.48■■□□□ 1.51
RTF1Q92541 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RTF1Q92541 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC24.47■■□□□ 1.51
RTF1Q92541 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC24.47■■□□□ 1.51
RTF1Q92541 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
RTF1Q92541 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
RTF1Q92541 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.47■■□□□ 1.51
RTF1Q92541 AL136038.3-201ENST00000561909 1096 ntBASIC24.47■■□□□ 1.51
RTF1Q92541 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
RTF1Q92541 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.47■■□□□ 1.51
RTF1Q92541 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
RTF1Q92541 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
RTF1Q92541 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 AC005332.7-201ENST00000614046 2005 ntBASIC24.47■■□□□ 1.51
RTF1Q92541 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RTF1Q92541 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC24.46■■□□□ 1.51
RTF1Q92541 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC24.46■■□□□ 1.51
RTF1Q92541 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
RTF1Q92541 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC24.46■■□□□ 1.51
RTF1Q92541 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.46■■□□□ 1.51
RTF1Q92541 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
RTF1Q92541 AC068587.9-201ENST00000641814 219 ntBASIC24.46■■□□□ 1.51
RTF1Q92541 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.46■■□□□ 1.51
RTF1Q92541 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RTF1Q92541 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.45■■□□□ 1.51
RTF1Q92541 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
RTF1Q92541 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
RTF1Q92541 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
RTF1Q92541 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
RTF1Q92541 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.51
RTF1Q92541 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
RTF1Q92541 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
RTF1Q92541 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC24.45■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms