Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 MIR940-201ENST00000401276 94 ntBASIC13.06□□□□□ -0.32
CSMD3Q7Z407 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 AL162377.1-201ENST00000618844 1793 ntBASIC13.06□□□□□ -0.32
CSMD3Q7Z407 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 AC104819.1-201ENST00000504587 486 ntBASIC13.06□□□□□ -0.32
CSMD3Q7Z407 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 USP39-204ENST00000409766 2033 ntTSL 2 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CSMD3Q7Z407 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 TERC-201ENST00000602385 541 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 PMS2P7-201ENST00000506558 1336 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 AC099778.1-201ENST00000568593 1911 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 HNRNPDP1-201ENST00000439535 754 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MCCD1P1-208ENST00000445732 328 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 MIR3180-5-201ENST00000583743 153 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 AC112497.1-201ENST00000624824 639 ntBASIC13.05□□□□□ -0.32
CSMD3Q7Z407 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CSMD3Q7Z407 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 LBX2-AS1-202ENST00000603175 2083 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 MIR564-202ENST00000385049 94 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC010327.4-202ENST00000591484 748 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 TREX1-205ENST00000625293 1783 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC079834.2-201ENST00000609776 1949 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC13.04□□□□□ -0.32
CSMD3Q7Z407 FAM197Y8-203ENST00000450145 560 ntBASIC13.04□□□□□ -0.32
CSMD3Q7Z407 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 679.7 ms