Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.07■□□□□ 0.64
USP39Q53GS9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.07■□□□□ 0.64
USP39Q53GS9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 AC092119.3-201ENST00000612618 583 ntBASIC19.07■□□□□ 0.64
USP39Q53GS9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
USP39Q53GS9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.07■□□□□ 0.64
USP39Q53GS9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP39Q53GS9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP39Q53GS9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.06■□□□□ 0.64
USP39Q53GS9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.06■□□□□ 0.64
USP39Q53GS9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.06■□□□□ 0.64
USP39Q53GS9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 AL645929.1-201ENST00000420084 975 ntBASIC19.06■□□□□ 0.64
USP39Q53GS9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.06■□□□□ 0.64
USP39Q53GS9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.06■□□□□ 0.64
USP39Q53GS9 PRELID1P1-202ENST00000567272 903 ntBASIC19.06■□□□□ 0.64
USP39Q53GS9 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.06■□□□□ 0.64
USP39Q53GS9 AC092329.2-201ENST00000598402 547 ntBASIC19.06■□□□□ 0.64
USP39Q53GS9 CR769767.2-201ENST00000622735 460 ntBASIC19.06■□□□□ 0.64
USP39Q53GS9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
USP39Q53GS9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP39Q53GS9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.06■□□□□ 0.64
USP39Q53GS9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP39Q53GS9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.06■□□□□ 0.64
USP39Q53GS9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP39Q53GS9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
USP39Q53GS9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.05■□□□□ 0.64
USP39Q53GS9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 RASA4DP-201ENST00000460726 1199 ntBASIC19.05■□□□□ 0.64
USP39Q53GS9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.05■□□□□ 0.64
USP39Q53GS9 NPAP1P7-201ENST00000613027 823 ntBASIC19.05■□□□□ 0.64
USP39Q53GS9 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.05■□□□□ 0.64
USP39Q53GS9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP39Q53GS9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
USP39Q53GS9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.04■□□□□ 0.64
USP39Q53GS9 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.04■□□□□ 0.64
USP39Q53GS9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.04■□□□□ 0.64
USP39Q53GS9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 MIR4674-201ENST00000582457 87 ntBASIC19.04■□□□□ 0.64
USP39Q53GS9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
USP39Q53GS9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.04■□□□□ 0.64
USP39Q53GS9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.04■□□□□ 0.64
USP39Q53GS9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
USP39Q53GS9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
USP39Q53GS9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
USP39Q53GS9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms