Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA4P78363 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA4P78363 SLC25A6P4-201ENST00000586535 553 ntBASIC16.15■□□□□ 0.18
ABCA4P78363 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.14■□□□□ 0.17
ABCA4P78363 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA4P78363 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
ABCA4P78363 AL136038.4-201ENST00000603606 1261 ntBASIC16.14■□□□□ 0.17
ABCA4P78363 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ABCA4P78363 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA4P78363 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.14■□□□□ 0.17
ABCA4P78363 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ABCA4P78363 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
ABCA4P78363 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.14■□□□□ 0.17
ABCA4P78363 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA4P78363 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
ABCA4P78363 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.14■□□□□ 0.17
ABCA4P78363 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.13■□□□□ 0.17
ABCA4P78363 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ABCA4P78363 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.13■□□□□ 0.17
ABCA4P78363 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.13■□□□□ 0.17
ABCA4P78363 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ABCA4P78363 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 AFG3L1P-217ENST00000557444 2447 ntBASIC16.13■□□□□ 0.17
ABCA4P78363 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 KRT18P31-201ENST00000506277 1292 ntBASIC16.13■□□□□ 0.17
ABCA4P78363 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.13■□□□□ 0.17
ABCA4P78363 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA4P78363 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 MIR3917-201ENST00000580971 93 ntBASIC16.12■□□□□ 0.17
ABCA4P78363 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.12■□□□□ 0.17
ABCA4P78363 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 LINC00167-201ENST00000530583 1419 ntBASIC16.12■□□□□ 0.17
ABCA4P78363 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 Z82202.1-201ENST00000623446 1880 ntBASIC16.12■□□□□ 0.17
ABCA4P78363 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms