Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG3P49916 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
LIG3P49916 AC067852.2-201ENST00000590513 2313 ntBASIC19.71■□□□□ 0.75
LIG3P49916 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LIG3P49916 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LIG3P49916 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
LIG3P49916 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
LIG3P49916 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIG3P49916 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
LIG3P49916 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.7■□□□□ 0.74
LIG3P49916 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LIG3P49916 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.7■□□□□ 0.74
LIG3P49916 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.7■□□□□ 0.74
LIG3P49916 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.7■□□□□ 0.74
LIG3P49916 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIG3P49916 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.7■□□□□ 0.74
LIG3P49916 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.7■□□□□ 0.74
LIG3P49916 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.7■□□□□ 0.74
LIG3P49916 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIG3P49916 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.69■□□□□ 0.74
LIG3P49916 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.69■□□□□ 0.74
LIG3P49916 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.69■□□□□ 0.74
LIG3P49916 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.69■□□□□ 0.74
LIG3P49916 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.69■□□□□ 0.74
LIG3P49916 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
LIG3P49916 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 HTR7P1-201ENST00000538670 1336 ntBASIC19.69■□□□□ 0.74
LIG3P49916 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIG3P49916 AL354751.1-201ENST00000412768 1863 ntBASIC19.69■□□□□ 0.74
LIG3P49916 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.69■□□□□ 0.74
LIG3P49916 AC090164.3-201ENST00000610780 2143 ntBASIC19.69■□□□□ 0.74
LIG3P49916 PRORSD1P-202ENST00000563365 2154 ntBASIC19.68■□□□□ 0.74
LIG3P49916 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.68■□□□□ 0.74
LIG3P49916 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIG3P49916 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
LIG3P49916 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LIG3P49916 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
LIG3P49916 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.68■□□□□ 0.74
LIG3P49916 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
LIG3P49916 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.68■□□□□ 0.74
LIG3P49916 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.68■□□□□ 0.74
LIG3P49916 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.68■□□□□ 0.74
LIG3P49916 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.68■□□□□ 0.74
LIG3P49916 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIG3P49916 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.68■□□□□ 0.74
LIG3P49916 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
LIG3P49916 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LIG3P49916 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
LIG3P49916 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms