Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RORAP35398 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
RORAP35398 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RORAP35398 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
RORAP35398 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RORAP35398 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.83■□□□□ 0.45
RORAP35398 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.83■□□□□ 0.45
RORAP35398 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
RORAP35398 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RORAP35398 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.83■□□□□ 0.44
RORAP35398 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.83■□□□□ 0.44
RORAP35398 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.83■□□□□ 0.44
RORAP35398 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
RORAP35398 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RORAP35398 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 AP000550.4-202ENST00000639755 178 ntBASIC17.83■□□□□ 0.44
RORAP35398 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RORAP35398 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RORAP35398 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RORAP35398 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RORAP35398 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RORAP35398 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RORAP35398 AL032819.2-201ENST00000624543 2162 ntBASIC17.82■□□□□ 0.44
RORAP35398 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.82■□□□□ 0.44
RORAP35398 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 UPK3BP1-201ENST00000428678 509 ntBASIC17.82■□□□□ 0.44
RORAP35398 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RORAP35398 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.82■□□□□ 0.44
RORAP35398 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RORAP35398 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.82■□□□□ 0.44
RORAP35398 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
RORAP35398 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 AC116562.4-201ENST00000641316 2276 ntBASIC17.81■□□□□ 0.44
RORAP35398 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.81■□□□□ 0.44
RORAP35398 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 PCED1CP-201ENST00000419887 785 ntBASIC17.81■□□□□ 0.44
RORAP35398 SPDYE15P-201ENST00000424157 909 ntBASIC17.81■□□□□ 0.44
RORAP35398 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 AC112907.2-201ENST00000448639 330 ntBASIC17.81■□□□□ 0.44
RORAP35398 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.81■□□□□ 0.44
RORAP35398 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 HYMAI.1-201ENST00000620949 238 ntBASIC17.81■□□□□ 0.44
RORAP35398 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.81■□□□□ 0.44
RORAP35398 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RORAP35398 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RORAP35398 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.8■□□□□ 0.44
RORAP35398 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms