Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
XRCC1P18887 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.74■□□□□ 0.59
XRCC1P18887 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.74■□□□□ 0.59
XRCC1P18887 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.74■□□□□ 0.59
XRCC1P18887 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
XRCC1P18887 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
XRCC1P18887 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 AC020763.4-201ENST00000623414 4170 ntBASIC18.74■□□□□ 0.59
XRCC1P18887 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
XRCC1P18887 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
XRCC1P18887 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 MFAP1P1-201ENST00000442257 1255 ntBASIC18.73■□□□□ 0.59
XRCC1P18887 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 EGLN1P1-201ENST00000531623 762 ntBASIC18.73■□□□□ 0.59
XRCC1P18887 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 AL161938.1-201ENST00000569833 2180 ntBASIC18.73■□□□□ 0.59
XRCC1P18887 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.73■□□□□ 0.59
XRCC1P18887 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
XRCC1P18887 AC104417.2-201ENST00000562989 1793 ntBASIC18.73■□□□□ 0.59
XRCC1P18887 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.73■□□□□ 0.59
XRCC1P18887 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 ZNF815P-204ENST00000434898 1737 ntBASIC18.72■□□□□ 0.59
XRCC1P18887 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 AL390961.4-201ENST00000623958 2535 ntBASIC18.72■□□□□ 0.59
XRCC1P18887 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.72■□□□□ 0.59
XRCC1P18887 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
XRCC1P18887 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
XRCC1P18887 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.71■□□□□ 0.59
XRCC1P18887 AC006333.2-201ENST00000607957 2099 ntBASIC18.71■□□□□ 0.59
XRCC1P18887 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.71■□□□□ 0.59
XRCC1P18887 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.71■□□□□ 0.59
XRCC1P18887 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 AC005363.2-201ENST00000618631 242 ntBASIC18.71■□□□□ 0.59
XRCC1P18887 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
XRCC1P18887 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.71■□□□□ 0.59
XRCC1P18887 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.71■□□□□ 0.59
XRCC1P18887 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
XRCC1P18887 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms