Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA1O95477 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA1O95477 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 AL158211.5-201ENST00000623583 2518 ntBASIC15.73■□□□□ 0.11
ABCA1O95477 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
ABCA1O95477 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.73■□□□□ 0.11
ABCA1O95477 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 LINC01311-201ENST00000565162 1445 ntBASIC15.73■□□□□ 0.11
ABCA1O95477 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
ABCA1O95477 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
ABCA1O95477 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA1O95477 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.73■□□□□ 0.11
ABCA1O95477 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA1O95477 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 MCC-208ENST00000514701 2855 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA1O95477 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
ABCA1O95477 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA1O95477 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.72■□□□□ 0.11
ABCA1O95477 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
ABCA1O95477 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
ABCA1O95477 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.72■□□□□ 0.11
ABCA1O95477 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
ABCA1O95477 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA1O95477 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 AC004870.1-201ENST00000315132 882 ntBASIC15.71■□□□□ 0.11
ABCA1O95477 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 AP000347.1-202ENST00000435868 847 ntBASIC15.71■□□□□ 0.11
ABCA1O95477 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.11
ABCA1O95477 EMBP1-201ENST00000458200 901 ntBASIC15.71■□□□□ 0.11
ABCA1O95477 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 AC007952.6-201ENST00000573168 2673 ntBASIC15.71■□□□□ 0.11
ABCA1O95477 AC003957.1-201ENST00000625108 2673 ntBASIC15.71■□□□□ 0.11
ABCA1O95477 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
ABCA1O95477 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA1O95477 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCA1O95477 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.71■□□□□ 0.11
ABCA1O95477 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA1O95477 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA1O95477 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.1
ABCA1O95477 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
ABCA1O95477 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.71■□□□□ 0.1
ABCA1O95477 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA1O95477 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 AC016734.2-201ENST00000624325 1377 ntBASIC15.7■□□□□ 0.1
ABCA1O95477 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 AL845331.1-201ENST00000424978 1190 ntBASIC15.7■□□□□ 0.1
ABCA1O95477 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.7■□□□□ 0.1
ABCA1O95477 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA1O95477 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms