Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HEIH-201ENST00000623091 1652 ntBASIC18.01■□□□□ 0.47
SEMA3DO95025 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SEMA3DO95025 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 KRT8P32-201ENST00000512863 1461 ntBASIC18.01■□□□□ 0.47
SEMA3DO95025 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18■□□□□ 0.47
SEMA3DO95025 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18■□□□□ 0.47
SEMA3DO95025 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18■□□□□ 0.47
SEMA3DO95025 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 AC008550.1-201ENST00000511500 884 ntBASIC18■□□□□ 0.47
SEMA3DO95025 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18■□□□□ 0.47
SEMA3DO95025 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 Z99916.2-201ENST00000604037 246 ntBASIC18■□□□□ 0.47
SEMA3DO95025 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18■□□□□ 0.47
SEMA3DO95025 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SEMA3DO95025 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18■□□□□ 0.47
SEMA3DO95025 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.99■□□□□ 0.47
SEMA3DO95025 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.99■□□□□ 0.47
SEMA3DO95025 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.99■□□□□ 0.47
SEMA3DO95025 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.99■□□□□ 0.47
SEMA3DO95025 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.99■□□□□ 0.47
SEMA3DO95025 AC026471.5-201ENST00000615068 467 ntBASIC17.99■□□□□ 0.47
SEMA3DO95025 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
SEMA3DO95025 AC068587.9-201ENST00000641814 219 ntBASIC17.99■□□□□ 0.47
SEMA3DO95025 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
SEMA3DO95025 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SEMA3DO95025 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
SEMA3DO95025 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SEMA3DO95025 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SEMA3DO95025 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
SEMA3DO95025 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.98■□□□□ 0.47
SEMA3DO95025 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.98■□□□□ 0.47
SEMA3DO95025 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SEMA3DO95025 AL355355.2-201ENST00000442321 338 ntBASIC17.98■□□□□ 0.47
SEMA3DO95025 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.98■□□□□ 0.47
SEMA3DO95025 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.98■□□□□ 0.47
SEMA3DO95025 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.98■□□□□ 0.47
SEMA3DO95025 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.98■□□□□ 0.47
SEMA3DO95025 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.98■□□□□ 0.47
SEMA3DO95025 REXO1L10P-201ENST00000615707 1290 ntBASIC17.98■□□□□ 0.47
SEMA3DO95025 REXO1L12P-201ENST00000622156 912 ntBASIC17.98■□□□□ 0.47
SEMA3DO95025 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms