Protein–RNA interactions for Protein: O00716

E2F3, Transcription factor E2F3, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
E2F3O00716 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.34■□□□□ 0.53
E2F3O00716 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 AC004951.3-201ENST00000418645 1148 ntBASIC18.34■□□□□ 0.53
E2F3O00716 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.34■□□□□ 0.53
E2F3O00716 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 RARRES2P10-201ENST00000564312 460 ntBASIC18.34■□□□□ 0.53
E2F3O00716 AC026271.3-201ENST00000571884 352 ntBASIC18.34■□□□□ 0.53
E2F3O00716 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
E2F3O00716 AF186192.3-201ENST00000583427 947 ntBASIC18.34■□□□□ 0.53
E2F3O00716 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.34■□□□□ 0.53
E2F3O00716 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
E2F3O00716 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 AC133561.5-201ENST00000635547 218 ntBASIC18.34■□□□□ 0.53
E2F3O00716 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.34■□□□□ 0.53
E2F3O00716 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.34■□□□□ 0.53
E2F3O00716 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.34■□□□□ 0.53
E2F3O00716 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
E2F3O00716 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
E2F3O00716 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
E2F3O00716 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
E2F3O00716 MTMR9LP-203ENST00000426597 1545 ntBASIC18.33■□□□□ 0.53
E2F3O00716 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
E2F3O00716 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.33■□□□□ 0.53
E2F3O00716 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
E2F3O00716 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
E2F3O00716 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.33■□□□□ 0.53
E2F3O00716 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.33■□□□□ 0.52
E2F3O00716 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.33■□□□□ 0.52
E2F3O00716 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
E2F3O00716 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.33■□□□□ 0.52
E2F3O00716 CR392000.1-201ENST00000624770 1228 ntBASIC18.33■□□□□ 0.52
E2F3O00716 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.33■□□□□ 0.52
E2F3O00716 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.33■□□□□ 0.52
E2F3O00716 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
E2F3O00716 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
E2F3O00716 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 KRT8P3-201ENST00000519669 1449 ntBASIC18.32■□□□□ 0.52
E2F3O00716 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.32■□□□□ 0.52
E2F3O00716 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 BICD1-207ENST00000551848 1962 ntBASIC18.32■□□□□ 0.52
E2F3O00716 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
E2F3O00716 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
E2F3O00716 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.32■□□□□ 0.52
E2F3O00716 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.32■□□□□ 0.52
E2F3O00716 AC008040.2-201ENST00000461049 708 ntBASIC18.32■□□□□ 0.52
E2F3O00716 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.32■□□□□ 0.52
E2F3O00716 AL355075.4-201ENST00000554988 638 ntBASIC18.32■□□□□ 0.52
E2F3O00716 AC012306.2-201ENST00000609350 630 ntBASIC18.32■□□□□ 0.52
E2F3O00716 AC097493.4-201ENST00000641197 219 ntBASIC18.32■□□□□ 0.52
E2F3O00716 AL031985.4-201ENST00000642138 673 ntBASIC18.32■□□□□ 0.52
E2F3O00716 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.32■□□□□ 0.52
E2F3O00716 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
E2F3O00716 KRT8P32-201ENST00000512863 1461 ntBASIC18.32■□□□□ 0.52
E2F3O00716 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.32■□□□□ 0.52
E2F3O00716 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
E2F3O00716 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms