Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.14■□□□□ 0.82
SMIM28A0A1B0GU29 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SMIM28A0A1B0GU29 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.14■□□□□ 0.82
SMIM28A0A1B0GU29 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 HEIH-201ENST00000623091 1652 ntBASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 AC005332.1-201ENST00000577698 1310 ntBASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 HBZP1-201ENST00000354915 429 ntBASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 AP000550.4-202ENST00000639755 178 ntBASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 AC006333.2-201ENST00000607957 2099 ntBASIC20.14■□□□□ 0.81
SMIM28A0A1B0GU29 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 AC034236.2-201ENST00000606662 1610 ntBASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 SPDYE13P-201ENST00000445314 798 ntBASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 AC104390.1-201ENST00000555663 520 ntBASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 MIR3917-201ENST00000580971 93 ntBASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 AL157888.1-201ENST00000631930 593 ntBASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.13■□□□□ 0.81
SMIM28A0A1B0GU29 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMIM28A0A1B0GU29 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 AL357033.4-201ENST00000617703 1807 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 IER3-202ENST00000376377 1350 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms