Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 AP000593.1-201ENST00000393668 712 ntBASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 AC079776.4-201ENST00000511039 504 ntBASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 FOSL1P1-201ENST00000511041 816 ntBASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 AC093525.10-201ENST00000625130 1569 ntBASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMD1Q9UGP4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AC036111.1-201ENST00000533973 1582 ntBASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 LINC00265-3P-201ENST00000447588 903 ntBASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AC007952.6-201ENST00000573168 2673 ntBASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AC003957.1-201ENST00000625108 2673 ntBASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMD1Q9UGP4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMD1Q9UGP4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 TPSP2-201ENST00000561760 610 ntBASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LIMD1Q9UGP4 AFG3L1P-217ENST00000557444 2447 ntBASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 HLA-F-220ENST00000434407 884 ntBASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms