Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL136038.3-201ENST00000561909 1096 ntBASIC16.52■□□□□ 0.24
LIME1Q9H400 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 AC083849.1-201ENST00000615227 514 ntBASIC16.52■□□□□ 0.24
LIME1Q9H400 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.52■□□□□ 0.24
LIME1Q9H400 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.52■□□□□ 0.23
LIME1Q9H400 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
LIME1Q9H400 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.52■□□□□ 0.23
LIME1Q9H400 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.52■□□□□ 0.23
LIME1Q9H400 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.52■□□□□ 0.23
LIME1Q9H400 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.52■□□□□ 0.23
LIME1Q9H400 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIME1Q9H400 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIME1Q9H400 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.51■□□□□ 0.23
LIME1Q9H400 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 TSPY21P-201ENST00000433481 731 ntBASIC16.51■□□□□ 0.23
LIME1Q9H400 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.51■□□□□ 0.23
LIME1Q9H400 TSPY23P-201ENST00000440136 739 ntBASIC16.51■□□□□ 0.23
LIME1Q9H400 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
LIME1Q9H400 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LIME1Q9H400 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 AL691432.3-201ENST00000621860 400 ntBASIC16.51■□□□□ 0.23
LIME1Q9H400 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LIME1Q9H400 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.51■□□□□ 0.23
LIME1Q9H400 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIME1Q9H400 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.51■□□□□ 0.23
LIME1Q9H400 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LIME1Q9H400 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.51■□□□□ 0.23
LIME1Q9H400 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LIME1Q9H400 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.5■□□□□ 0.23
LIME1Q9H400 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.5■□□□□ 0.23
LIME1Q9H400 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.5■□□□□ 0.23
LIME1Q9H400 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.5■□□□□ 0.23
LIME1Q9H400 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.5■□□□□ 0.23
LIME1Q9H400 ZNF444P1-201ENST00000559497 298 ntBASIC16.5■□□□□ 0.23
LIME1Q9H400 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.5■□□□□ 0.23
LIME1Q9H400 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIME1Q9H400 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.5■□□□□ 0.23
LIME1Q9H400 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIME1Q9H400 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.49■□□□□ 0.23
LIME1Q9H400 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LIME1Q9H400 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.49■□□□□ 0.23
LIME1Q9H400 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.49■□□□□ 0.23
LIME1Q9H400 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LIME1Q9H400 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms