Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MMP28Q9H239 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
MMP28Q9H239 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MMP28Q9H239 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.59■□□□□ 0.25
MMP28Q9H239 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.59■□□□□ 0.25
MMP28Q9H239 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.59■□□□□ 0.25
MMP28Q9H239 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.59■□□□□ 0.25
MMP28Q9H239 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.59■□□□□ 0.25
MMP28Q9H239 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.59■□□□□ 0.25
MMP28Q9H239 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 AL356652.1-201ENST00000615962 565 ntBASIC16.59■□□□□ 0.25
MMP28Q9H239 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.59■□□□□ 0.25
MMP28Q9H239 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MMP28Q9H239 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.59■□□□□ 0.25
MMP28Q9H239 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
MMP28Q9H239 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.58■□□□□ 0.25
MMP28Q9H239 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
MMP28Q9H239 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
MMP28Q9H239 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
MMP28Q9H239 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.58■□□□□ 0.25
MMP28Q9H239 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
MMP28Q9H239 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 ABHD17AP1-201ENST00000358206 933 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.58■□□□□ 0.24
MMP28Q9H239 AF201337.1-201ENST00000520239 748 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.58■□□□□ 0.24
MMP28Q9H239 AL121832.2-201ENST00000610979 668 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 AL050303.2-201ENST00000619798 666 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 AC010980.2-201ENST00000587099 1412 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.58■□□□□ 0.24
MMP28Q9H239 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
MMP28Q9H239 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.58■□□□□ 0.24
MMP28Q9H239 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 AC134043.2-201ENST00000624206 2238 ntBASIC16.58■□□□□ 0.24
MMP28Q9H239 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.58■□□□□ 0.24
MMP28Q9H239 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MMP28Q9H239 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms