Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.28■■□□□ 1.16
NEK1Q96PY6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NEK1Q96PY6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 MIR4497-201ENST00000583208 89 ntBASIC22.27■■□□□ 1.16
NEK1Q96PY6 RNF165-205ENST00000588679 2904 ntBASIC22.27■■□□□ 1.16
NEK1Q96PY6 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 KRT17P2-201ENST00000300992 1314 ntBASIC22.27■■□□□ 1.16
NEK1Q96PY6 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NEK1Q96PY6 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
NEK1Q96PY6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.15
NEK1Q96PY6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 CA15P1-201ENST00000481698 905 ntBASIC22.26■■□□□ 1.15
NEK1Q96PY6 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 AL355075.4-201ENST00000554988 638 ntBASIC22.26■■□□□ 1.15
NEK1Q96PY6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 AP000525.1-201ENST00000608286 694 ntBASIC22.26■■□□□ 1.15
NEK1Q96PY6 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.26■■□□□ 1.15
NEK1Q96PY6 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NEK1Q96PY6 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NEK1Q96PY6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
NEK1Q96PY6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.24■■□□□ 1.15
NEK1Q96PY6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.24■■□□□ 1.15
NEK1Q96PY6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.24■■□□□ 1.15
NEK1Q96PY6 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.24■■□□□ 1.15
NEK1Q96PY6 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NEK1Q96PY6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms