Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC00477Q96M19 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00477Q96M19 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 AL390961.4-201ENST00000623958 2535 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 KRT16P5-201ENST00000455284 522 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 AP003097.1-201ENST00000530657 1135 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 AC008403.3-201ENST00000598924 454 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 MTDHP1-201ENST00000605323 784 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.11□□□□□ -0.15
LINC00477Q96M19 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
LINC00477Q96M19 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00477Q96M19 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 BICD1-207ENST00000551848 1962 ntBASIC14.1□□□□□ -0.15
LINC00477Q96M19 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.1□□□□□ -0.15
LINC00477Q96M19 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
LINC00477Q96M19 KRT8P41-201ENST00000533985 1514 ntBASIC14.1□□□□□ -0.15
LINC00477Q96M19 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00477Q96M19 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 AC073592.3-201ENST00000625118 1834 ntBASIC14.09□□□□□ -0.15
LINC00477Q96M19 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms