Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHFRQ96EP1 RCC2P3-201ENST00000418112 1537 ntBASIC19.15■□□□□ 0.66
CHFRQ96EP1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHFRQ96EP1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CHFRQ96EP1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.14■□□□□ 0.66
CHFRQ96EP1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.14■□□□□ 0.66
CHFRQ96EP1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
CHFRQ96EP1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CHFRQ96EP1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.14■□□□□ 0.66
CHFRQ96EP1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHFRQ96EP1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHFRQ96EP1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHFRQ96EP1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHFRQ96EP1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHFRQ96EP1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CHFRQ96EP1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 CHCHD2P8-201ENST00000429873 447 ntBASIC19.13■□□□□ 0.65
CHFRQ96EP1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 FDX1P1-201ENST00000449115 551 ntBASIC19.13■□□□□ 0.65
CHFRQ96EP1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 TPSP2-201ENST00000561760 610 ntBASIC19.13■□□□□ 0.65
CHFRQ96EP1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.13■□□□□ 0.65
CHFRQ96EP1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHFRQ96EP1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 AL845331.1-201ENST00000424978 1190 ntBASIC19.12■□□□□ 0.65
CHFRQ96EP1 TSPY22P-201ENST00000427496 604 ntBASIC19.12■□□□□ 0.65
CHFRQ96EP1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHFRQ96EP1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.12■□□□□ 0.65
CHFRQ96EP1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms