Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 AC066615.1-201ENST00000640911 628 ntBASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ZNF540Q8NDQ6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
ZNF540Q8NDQ6 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 AC083880.1-201ENST00000608266 535 ntBASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 AL589743.5-201ENST00000616611 1050 ntBASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
ZNF540Q8NDQ6 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 MCRIP2P1-201ENST00000394346 511 ntBASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms