Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC44A3Q8N4M1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.26■□□□□ 0.67
SLC44A3Q8N4M1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC44A3Q8N4M1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SLC44A3Q8N4M1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 AL671883.3-201ENST00000603274 991 ntBASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC44A3Q8N4M1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 AL109659.2-201ENST00000606809 1674 ntBASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 Z69720.1-201ENST00000601483 472 ntBASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 AC120114.3-201ENST00000611923 658 ntBASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.24■□□□□ 0.67
SLC44A3Q8N4M1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 AL590627.1-203ENST00000421194 1026 ntBASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 IGHV3-47-201ENST00000425060 335 ntBASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 HOXB1-202ENST00000577092 1414 ntBASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC44A3Q8N4M1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 AC008556.1-201ENST00000610908 2040 ntBASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC44A3Q8N4M1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms