Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC65Q8IXS2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC65Q8IXS2 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC65Q8IXS2 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.89■□□□□ 0.94
CCDC65Q8IXS2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 MIR4497-201ENST00000583208 89 ntBASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC65Q8IXS2 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 CA15P1-201ENST00000481698 905 ntBASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC65Q8IXS2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 ANO7L1-203ENST00000602586 1720 ntBASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 AC079598.2-202ENST00000546624 1451 ntBASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC65Q8IXS2 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 RCC2P3-201ENST00000418112 1537 ntBASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC65Q8IXS2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 MTMR9LP-203ENST00000426597 1545 ntBASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC65Q8IXS2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms