Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AC004951.3-201ENST00000418645 1148 ntBASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AC091390.4-202ENST00000476426 537 ntBASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC40Q4G0X9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 ANO7L1-203ENST00000602586 1720 ntBASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 PRSS44-201ENST00000515154 1146 ntBASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 AC073195.1-201ENST00000607241 877 ntBASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 AL031985.4-201ENST00000642138 673 ntBASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC40Q4G0X9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC40Q4G0X9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC40Q4G0X9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.7■□□□□ 0.91
CCDC40Q4G0X9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.7■□□□□ 0.91
CCDC40Q4G0X9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 AC011298.2-201ENST00000617989 482 ntBASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 AC104581.1-202ENST00000635932 2618 ntBASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC40Q4G0X9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 NEFHP1-201ENST00000412845 2629 ntBASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC40Q4G0X9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms