Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 AC008556.1-201ENST00000610908 2040 ntBASIC19.95■□□□□ 0.78
CHD9Q3L8U1 RPSAP43-201ENST00000402237 625 ntBASIC19.95■□□□□ 0.78
CHD9Q3L8U1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.95■□□□□ 0.78
CHD9Q3L8U1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AC099343.3-201ENST00000605834 2503 ntBASIC19.94■□□□□ 0.78
CHD9Q3L8U1 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AC124864.1-201ENST00000623408 392 ntBASIC19.94■□□□□ 0.78
CHD9Q3L8U1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AL162377.1-201ENST00000618844 1793 ntBASIC19.94■□□□□ 0.78
CHD9Q3L8U1 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 KRT8P3-201ENST00000519669 1449 ntBASIC19.94■□□□□ 0.78
CHD9Q3L8U1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 GPR32P1-201ENST00000601788 811 ntBASIC19.94■□□□□ 0.78
CHD9Q3L8U1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHD9Q3L8U1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 MINOS1P3-201ENST00000457048 203 ntBASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHD9Q3L8U1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 AL035633.1-201ENST00000406139 838 ntBASIC19.92■□□□□ 0.78
CHD9Q3L8U1 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.92■□□□□ 0.78
CHD9Q3L8U1 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 AC104390.1-201ENST00000555663 520 ntBASIC19.92■□□□□ 0.78
CHD9Q3L8U1 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms