Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.46□□□□□ -0.25
COL7A1Q02388 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL7A1Q02388 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC13.46□□□□□ -0.25
COL7A1Q02388 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.46□□□□□ -0.25
COL7A1Q02388 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.46□□□□□ -0.25
COL7A1Q02388 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.46□□□□□ -0.26
COL7A1Q02388 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.46□□□□□ -0.26
COL7A1Q02388 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL7A1Q02388 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.46□□□□□ -0.26
COL7A1Q02388 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.46□□□□□ -0.26
COL7A1Q02388 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL7A1Q02388 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC13.45□□□□□ -0.26
COL7A1Q02388 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL7A1Q02388 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 MIR3197-201ENST00000582241 73 ntBASIC13.45□□□□□ -0.26
COL7A1Q02388 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.45□□□□□ -0.26
COL7A1Q02388 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.45□□□□□ -0.26
COL7A1Q02388 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.45□□□□□ -0.26
COL7A1Q02388 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.45□□□□□ -0.26
COL7A1Q02388 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.45□□□□□ -0.26
COL7A1Q02388 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.45□□□□□ -0.26
COL7A1Q02388 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
COL7A1Q02388 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL7A1Q02388 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.44□□□□□ -0.26
COL7A1Q02388 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.44□□□□□ -0.26
COL7A1Q02388 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL7A1Q02388 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 MCCD1P1-208ENST00000445732 328 ntBASIC13.44□□□□□ -0.26
COL7A1Q02388 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC13.44□□□□□ -0.26
COL7A1Q02388 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.44□□□□□ -0.26
COL7A1Q02388 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC13.44□□□□□ -0.26
COL7A1Q02388 SDHAP1-207ENST00000440850 2000 ntBASIC13.44□□□□□ -0.26
COL7A1Q02388 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.44□□□□□ -0.26
COL7A1Q02388 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL7A1Q02388 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL7A1Q02388 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 IGHGP-201ENST00000390555 1178 ntBASIC13.43□□□□□ -0.26
COL7A1Q02388 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms