Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.15■□□□□ 0.5
HMGCS1Q01581 TMEM191A-211ENST00000637163 1067 ntBASIC18.15■□□□□ 0.5
HMGCS1Q01581 RCC2P6-201ENST00000526625 1557 ntBASIC18.15■□□□□ 0.5
HMGCS1Q01581 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS1Q01581 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS1Q01581 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGCS1Q01581 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGCS1Q01581 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.14■□□□□ 0.5
HMGCS1Q01581 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
HMGCS1Q01581 AC138932.1-201ENST00000534164 6830 ntBASIC18.14■□□□□ 0.49
HMGCS1Q01581 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 PRORSD1P-201ENST00000295112 541 ntBASIC18.14■□□□□ 0.49
HMGCS1Q01581 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 RPPH1-201ENST00000516869 333 ntBASIC18.14■□□□□ 0.49
HMGCS1Q01581 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS1Q01581 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.14■□□□□ 0.49
HMGCS1Q01581 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS1Q01581 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 AC126763.1-201ENST00000552015 2118 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 HEIH-201ENST00000623091 1652 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 AC135050.7-201ENST00000624508 2218 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 KSR1P1-201ENST00000446298 240 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 AC091390.4-202ENST00000476426 537 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 AL353708.3-201ENST00000610272 989 ntBASIC18.13■□□□□ 0.49
HMGCS1Q01581 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS1Q01581 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
HMGCS1Q01581 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS1Q01581 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms