Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.39■■□□□ 1.01
CCNA1P78396 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.39■■□□□ 1.01
CCNA1P78396 IGHV3-41-201ENST00000613121 348 ntBASIC21.39■■□□□ 1.01
CCNA1P78396 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCNA1P78396 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CCNA1P78396 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCNA1P78396 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CCNA1P78396 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 LINC01006-201ENST00000333319 2292 ntBASIC21.38■■□□□ 1.01
CCNA1P78396 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CCNA1P78396 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CCNA1P78396 KRT18P31-201ENST00000506277 1292 ntBASIC21.38■■□□□ 1.01
CCNA1P78396 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.38■■□□□ 1.01
CCNA1P78396 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
CCNA1P78396 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.38■■□□□ 1.01
CCNA1P78396 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCNA1P78396 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 TEX21P-204ENST00000641479 1693 ntBASIC21.37■■□□□ 1.01
CCNA1P78396 AC034236.2-201ENST00000606662 1610 ntBASIC21.37■■□□□ 1.01
CCNA1P78396 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CCNA1P78396 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.37■■□□□ 1.01
CCNA1P78396 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.37■■□□□ 1.01
CCNA1P78396 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 AL160237.2-201ENST00000556165 472 ntBASIC21.37■■□□□ 1.01
CCNA1P78396 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 AL390719.2-201ENST00000606993 987 ntBASIC21.37■■□□□ 1.01
CCNA1P78396 AL031008.1-201ENST00000619963 541 ntBASIC21.37■■□□□ 1.01
CCNA1P78396 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.37■■□□□ 1.01
CCNA1P78396 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CCNA1P78396 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CCNA1P78396 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.37■■□□□ 1.01
CCNA1P78396 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCNA1P78396 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CCNA1P78396 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNA1P78396 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.36■■□□□ 1.01
CCNA1P78396 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNA1P78396 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCNA1P78396 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.36■■□□□ 1.01
CCNA1P78396 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.36■■□□□ 1.01
CCNA1P78396 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCNA1P78396 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.36■■□□□ 1.01
CCNA1P78396 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.36■■□□□ 1.01
CCNA1P78396 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.36■■□□□ 1.01
CCNA1P78396 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCNA1P78396 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CCNA1P78396 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.35■■□□□ 1.01
CCNA1P78396 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 KRT8P32-201ENST00000512863 1461 ntBASIC21.35■■□□□ 1.01
CCNA1P78396 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CCNA1P78396 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.35■■□□□ 1.01
CCNA1P78396 Z69720.1-201ENST00000601483 472 ntBASIC21.35■■□□□ 1.01
CCNA1P78396 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.35■■□□□ 1.01
CCNA1P78396 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.35■■□□□ 1.01
CCNA1P78396 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCNA1P78396 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.35■■□□□ 1.01
CCNA1P78396 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CCNA1P78396 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CCNA1P78396 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
CCNA1P78396 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNA1P78396 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.34■■□□□ 1.01
CCNA1P78396 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNA1P78396 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCNA1P78396 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms