Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.37■□□□□ 0.53
YBX1P67809 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
YBX1P67809 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
YBX1P67809 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
YBX1P67809 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
YBX1P67809 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
YBX1P67809 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.36■□□□□ 0.53
YBX1P67809 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 MFAP1P1-201ENST00000442257 1255 ntBASIC18.36■□□□□ 0.53
YBX1P67809 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.36■□□□□ 0.53
YBX1P67809 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.36■□□□□ 0.53
YBX1P67809 FITM1-202ENST00000559294 800 ntBASIC18.36■□□□□ 0.53
YBX1P67809 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.36■□□□□ 0.53
YBX1P67809 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.36■□□□□ 0.53
YBX1P67809 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.36■□□□□ 0.53
YBX1P67809 DGCR10-201ENST00000609839 495 ntBASIC18.36■□□□□ 0.53
YBX1P67809 AC096733.2-201ENST00000609937 1394 ntBASIC18.36■□□□□ 0.53
YBX1P67809 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
YBX1P67809 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
YBX1P67809 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
YBX1P67809 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 AC135050.7-201ENST00000624508 2218 ntBASIC18.35■□□□□ 0.53
YBX1P67809 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.35■□□□□ 0.53
YBX1P67809 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.35■□□□□ 0.53
YBX1P67809 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 TSPY21P-201ENST00000433481 731 ntBASIC18.35■□□□□ 0.53
YBX1P67809 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.35■□□□□ 0.53
YBX1P67809 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.35■□□□□ 0.53
YBX1P67809 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
YBX1P67809 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
YBX1P67809 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.34■□□□□ 0.53
YBX1P67809 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.34■□□□□ 0.53
YBX1P67809 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.34■□□□□ 0.53
YBX1P67809 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 INGX-201ENST00000359239 846 ntBASIC18.34■□□□□ 0.53
YBX1P67809 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.34■□□□□ 0.53
YBX1P67809 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
YBX1P67809 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
YBX1P67809 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
YBX1P67809 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
YBX1P67809 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms