Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDX1P52945 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.27■□□□□ 0.52
PDX1P52945 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.27■□□□□ 0.52
PDX1P52945 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDX1P52945 AL450487.1-201ENST00000426799 995 ntBASIC18.27■□□□□ 0.52
PDX1P52945 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.27■□□□□ 0.52
PDX1P52945 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.27■□□□□ 0.52
PDX1P52945 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.27■□□□□ 0.52
PDX1P52945 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.27■□□□□ 0.52
PDX1P52945 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDX1P52945 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDX1P52945 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PDX1P52945 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
PDX1P52945 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.27■□□□□ 0.51
PDX1P52945 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PDX1P52945 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
PDX1P52945 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.26■□□□□ 0.51
PDX1P52945 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
PDX1P52945 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 LINC01311-201ENST00000565162 1445 ntBASIC18.26■□□□□ 0.51
PDX1P52945 AC093484.2-201ENST00000580996 2166 ntBASIC18.26■□□□□ 0.51
PDX1P52945 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.26■□□□□ 0.51
PDX1P52945 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.26■□□□□ 0.51
PDX1P52945 CR769767.2-201ENST00000622735 460 ntBASIC18.26■□□□□ 0.51
PDX1P52945 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 AC104417.2-201ENST00000562989 1793 ntBASIC18.26■□□□□ 0.51
PDX1P52945 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDX1P52945 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
PDX1P52945 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PDX1P52945 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.26■□□□□ 0.51
PDX1P52945 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PDX1P52945 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
PDX1P52945 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.25■□□□□ 0.51
PDX1P52945 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.25■□□□□ 0.51
PDX1P52945 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.25■□□□□ 0.51
PDX1P52945 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.25■□□□□ 0.51
PDX1P52945 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.25■□□□□ 0.51
PDX1P52945 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.25■□□□□ 0.51
PDX1P52945 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.25■□□□□ 0.51
PDX1P52945 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PDX1P52945 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.25■□□□□ 0.51
PDX1P52945 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDX1P52945 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.24■□□□□ 0.51
PDX1P52945 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PDX1P52945 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
PDX1P52945 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.24■□□□□ 0.51
PDX1P52945 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.24■□□□□ 0.51
PDX1P52945 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
PDX1P52945 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.24■□□□□ 0.51
PDX1P52945 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDX1P52945 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms