Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
RFX3P48380 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.7■□□□□ 0.42
RFX3P48380 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RFX3P48380 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX3P48380 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
RFX3P48380 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX3P48380 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX3P48380 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
RFX3P48380 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX3P48380 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX3P48380 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RFX3P48380 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX3P48380 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RFX3P48380 KRT8P41-201ENST00000533985 1514 ntBASIC17.68■□□□□ 0.42
RFX3P48380 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX3P48380 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX3P48380 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RFX3P48380 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.68■□□□□ 0.42
RFX3P48380 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX3P48380 AC008550.1-201ENST00000511500 884 ntBASIC17.68■□□□□ 0.42
RFX3P48380 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.68■□□□□ 0.42
RFX3P48380 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX3P48380 Z99916.2-201ENST00000604037 246 ntBASIC17.68■□□□□ 0.42
RFX3P48380 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX3P48380 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX3P48380 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
RFX3P48380 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX3P48380 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX3P48380 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RFX3P48380 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 RCC2P6-201ENST00000526625 1557 ntBASIC17.67■□□□□ 0.42
RFX3P48380 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
RFX3P48380 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RFX3P48380 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RFX3P48380 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.67■□□□□ 0.42
RFX3P48380 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.67■□□□□ 0.42
RFX3P48380 AP001412.1-201ENST00000608405 714 ntBASIC17.67■□□□□ 0.42
RFX3P48380 AC011298.2-201ENST00000617989 482 ntBASIC17.67■□□□□ 0.42
RFX3P48380 AP006294.2-201ENST00000641667 209 ntBASIC17.67■□□□□ 0.42
RFX3P48380 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RFX3P48380 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.67■□□□□ 0.42
RFX3P48380 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
RFX3P48380 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms