Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 AC107956.1-201ENST00000494359 873 ntBASIC15.35■□□□□ 0.05
CDX1P47902 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.35■□□□□ 0.05
CDX1P47902 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 AC233702.5-201ENST00000584107 538 ntBASIC15.35■□□□□ 0.05
CDX1P47902 Z99916.2-201ENST00000604037 246 ntBASIC15.35■□□□□ 0.05
CDX1P47902 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
CDX1P47902 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
CDX1P47902 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
CDX1P47902 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.34■□□□□ 0.05
CDX1P47902 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.34■□□□□ 0.05
CDX1P47902 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 AC116351.2-201ENST00000606540 1585 ntBASIC15.34■□□□□ 0.05
CDX1P47902 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.34■□□□□ 0.05
CDX1P47902 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CDX1P47902 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 LINC01465-201ENST00000408887 1940 ntBASIC15.34■□□□□ 0.05
CDX1P47902 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
CDX1P47902 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
CDX1P47902 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.34■□□□□ 0.05
CDX1P47902 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.34■□□□□ 0.05
CDX1P47902 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CDX1P47902 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CDX1P47902 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
CDX1P47902 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 AL356309.3-201ENST00000624132 1934 ntBASIC15.33■□□□□ 0.05
CDX1P47902 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDX1P47902 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CDX1P47902 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CDX1P47902 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.33■□□□□ 0.04
CDX1P47902 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 AL353807.1-201ENST00000427475 662 ntBASIC15.33■□□□□ 0.04
CDX1P47902 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.33■□□□□ 0.04
CDX1P47902 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.33■□□□□ 0.04
CDX1P47902 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.33■□□□□ 0.04
CDX1P47902 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CDX1P47902 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.33■□□□□ 0.04
CDX1P47902 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
CDX1P47902 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC15.33■□□□□ 0.04
CDX1P47902 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDX1P47902 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CDX1P47902 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CDX1P47902 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 AL596275.1-201ENST00000423464 877 ntBASIC15.32■□□□□ 0.04
CDX1P47902 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms