Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19■□□□□ 0.63
CHRNA4P43681 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA4P43681 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA4P43681 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHRNA4P43681 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHRNA4P43681 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.99■□□□□ 0.63
CHRNA4P43681 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.99■□□□□ 0.63
CHRNA4P43681 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.99■□□□□ 0.63
CHRNA4P43681 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.99■□□□□ 0.63
CHRNA4P43681 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.99■□□□□ 0.63
CHRNA4P43681 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 MTMR9LP-203ENST00000426597 1545 ntBASIC18.99■□□□□ 0.63
CHRNA4P43681 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHRNA4P43681 Z98044.1-201ENST00000632503 1764 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
CHRNA4P43681 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 ANO7L1-203ENST00000602586 1720 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 RCC2P3-201ENST00000418112 1537 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
CHRNA4P43681 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 KRT8P9-201ENST00000558927 1449 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 AC104581.1-202ENST00000635932 2618 ntBASIC18.98■□□□□ 0.63
CHRNA4P43681 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHRNA4P43681 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.97■□□□□ 0.63
CHRNA4P43681 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 FITM1-202ENST00000559294 800 ntBASIC18.97■□□□□ 0.63
CHRNA4P43681 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.97■□□□□ 0.63
CHRNA4P43681 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.97■□□□□ 0.63
CHRNA4P43681 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHRNA4P43681 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.97■□□□□ 0.63
CHRNA4P43681 WIZP1-201ENST00000531444 2299 ntBASIC18.97■□□□□ 0.63
CHRNA4P43681 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHRNA4P43681 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.96■□□□□ 0.63
CHRNA4P43681 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.96■□□□□ 0.63
CHRNA4P43681 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.96■□□□□ 0.63
CHRNA4P43681 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
CHRNA4P43681 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHRNA4P43681 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.96■□□□□ 0.63
CHRNA4P43681 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms