Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.42■□□□□ 0.22
COL8A1P27658 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.41■□□□□ 0.22
COL8A1P27658 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.41■□□□□ 0.22
COL8A1P27658 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL8A1P27658 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.41■□□□□ 0.22
COL8A1P27658 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL8A1P27658 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
COL8A1P27658 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL8A1P27658 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.4■□□□□ 0.22
COL8A1P27658 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.4■□□□□ 0.22
COL8A1P27658 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.4■□□□□ 0.22
COL8A1P27658 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.4■□□□□ 0.22
COL8A1P27658 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
COL8A1P27658 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL8A1P27658 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.4■□□□□ 0.22
COL8A1P27658 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.4■□□□□ 0.22
COL8A1P27658 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.4■□□□□ 0.22
COL8A1P27658 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.4■□□□□ 0.22
COL8A1P27658 Z69720.1-201ENST00000601483 472 ntBASIC16.4■□□□□ 0.22
COL8A1P27658 AL049840.3-201ENST00000602669 611 ntBASIC16.4■□□□□ 0.22
COL8A1P27658 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL8A1P27658 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL8A1P27658 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.4■□□□□ 0.22
COL8A1P27658 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL8A1P27658 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL8A1P27658 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL8A1P27658 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.39■□□□□ 0.21
COL8A1P27658 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL8A1P27658 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.39■□□□□ 0.21
COL8A1P27658 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 IGHV3-47-201ENST00000425060 335 ntBASIC16.39■□□□□ 0.21
COL8A1P27658 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.39■□□□□ 0.21
COL8A1P27658 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.39■□□□□ 0.21
COL8A1P27658 AC090616.6-201ENST00000582640 721 ntBASIC16.39■□□□□ 0.21
COL8A1P27658 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.39■□□□□ 0.21
COL8A1P27658 AC005332.3-201ENST00000589904 676 ntBASIC16.39■□□□□ 0.21
COL8A1P27658 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 AC140113.2-201ENST00000604370 208 ntBASIC16.39■□□□□ 0.21
COL8A1P27658 AC092720.2-201ENST00000602388 1665 ntBASIC16.39■□□□□ 0.21
COL8A1P27658 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL8A1P27658 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms